Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0077 ATGGAGAGAATGTTCCCTCCTAAGAAGCCCTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCTGGCCTCGTCCTCACCACCGACCCTAAGCCCCGTCTTCGCTGGACCGTCGAGCTCCATGAACGCTTTGTTGACGCTGTCACTCAGCTTGGAGGCCCTGACAAGGCCACTCCTAAAACCATCATGAGGGTCATGGGTGTGAAGGGTCTCACCCTTTACCATCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGGAAGCAACCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGAATGAGAGCATCGGCTTTGGAGCTTCAACGAAATACAGCCTCCCCATCGGCCATGATTGGTCGCAACATGAATGATAACTCACACATGGTTGATGCGATCAGGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAACTCGAGGTCCAAAAACATCTTCAGCTGAGAATTGAAGCTCAAGGGAAGTATATGCAAAGTATACTAGAGAAGGCTTATCAAACACTTGCAGGTGAAAACATGGCTGCCACTAATAACTTAAAGAGCAATATTAATATTGGAGCAGCTCAAGCCATCCCTGAAATAGGAGCAGGAGTCATGAAAGATTTCGGTTCCCCTCTTAGTTTTCCTTTCCAAGAACTCAACATTTACGGCGGCGGTGGCGGCGGCGACCAACTTGATCATCATCTTCACCATATGGAGAGGCCACAACTTGAAGGGTTGATGATTCCAAATAATAATAACAATAACAACAATAATAATGAAACTTTGTGTCTGGGGAAGAAGAGGCCTAGCCCCTATAACAGTACAACAAGTACTGGGAAAAGCCCTTTGATTTGGAACGACGATCTTCGGCTTCATCAAGATTTAGGGACGGCTTCGTCGTGCCTGGGAGGACCTCAAGATGATCCTTTCAAAGGTCATGACCGGCAACTTCATATTGCACCGCCATCGTTGGATCACAGAGGTGGCGAAATGGATCCCATGTCGGAGATTTATGACACGAAGCCGCCGGTGCTACAAGGGGAAGCTGTGTGCGAGAAGAAGTTTCCAGATGCTTCAGTGAAGCTCGAAAGGCCATCACCAAGAAGGGCACCCACCAGTGCTCTTCAGGCAGAAAGGATGAGTCCTATGATTAATAGTGGTACTATGGCACAAGGTAGAAGCTCACCATTTGGGTGA 1215 0.4774 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASPSAMIGRNMNDNSHMVDAIRMQMEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMAATNNLKSNINIGAAQAIPEIGAGVMKDFGSPLSFPFQELNIYGGGGGGDQLDHHLHHMERPQLEGLMIPNNNNNNNNNNETLCLGKKRPSPYNSTTSTGKSPLIWNDDLRLHQDLGTASSCLGGPQDDPFKGHDRQLHIAPPSLDHRGGEMDPMSEIYDTKPPVLQGEAVCEKKFPDASVKLERPSPRRAPTSALQAERMSPMINSGTMAQGRSSPFG 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0077 404 MobiDBLite consensus disorder prediction 363 404 - -
Dere08g0077 404 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Dere08g0077 404 MobiDBLite consensus disorder prediction 1 20 - -
Dere08g0077 404 FunFam Myb family transcription factor 34 92 - -
Dere08g0077 404 MobiDBLite consensus disorder prediction 384 404 - -
Dere08g0077 404 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Dere08g0077 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Dere08g0077 404 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Dere08g0077 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Dere08g0077 404 Gene3D - 34 92 - -
Dere08g0077 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 193 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0077 Dere-ChrDere08 1876948 1879359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0077 4 404 G2-like Transcription Factor Family AT1G79430 54.501 4.87e-123 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere08g0077 Myb_DNA-binding 2.3e-06 CL0123