Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0053 ATGGGCCATCGTTGCTGCAGCAAACAGAAGATCAAGAGAGGGCTTTGGTCTCCTGAAGAAGATGACAAGCTCGTCAGATTCATCACCACTCATGGCCATAAAAGTTGGAGTTCTGTACCAAAACTTGCAGGTTTGCAGAGGTGCGGGAAGAGTTGCAGATTGAGATGGATAAATTATTTGAGACCTGACCTCAAGAGGGGTTCCTTCACTGCCGACGAAGAACAAACCATTATCGACGTTCATAGAATTCTGGGAAATAGATGGGCTCAGATAGCGAAGCACCTACCGGGGCGAACAGACAACGAGGTGAAGAATTTTTGGAACTCGTGCATTAAGAAGAAGCTCATTTCTCAAGGCTTCGATCCGCAAACTCACAATCTCCTCTCTTCTCATAGGAGACCCTCTGTTTCTTCCTCTGCATGTATTAATAATTCCGACAATTCCATTTTCAAACTATCTCACGAACCCGATAATCTAAATGTTCAATCTGCTAGCTCCACCATTTTCTCCTTCGAATATCATCAACAGCCCTCAAGCATTAATGTCTCTAACAGTAATATCTACGAGTCTCATACATTCTCAGATCCCTTTGAATCCTCCATTAATGGGAAGTCTGCTCCCAACATGCCTTCTTATTCTTGCATGACGAGTAATTATTATCCATCTTCAGTTACTGGGTTTTCTGAGACTGATCAGAATAGAGTATGGGTTTCAAGGGATGACGCTGAGGCTGAGAACTTTAGAGCTCAAACATTAATGGGAGGAGGAGTAGTTGAAGCACAAATAGAACAAGAGAAGGACAAGAGTACTACTACTACTACATGTTGTGAGAAGGGAGTTATTGAGGAAGTCATCAGAGAAGAAGCAGATTATAATGGTTGCTTGGAGGGCTCTAATAATAGTAACTTTGATTTTGGGTTGTTGGAGGGTGTACTTAACTCTGAATATATGTCTTATGACGATCTCTCCTCTATAGATGACCTTGCATGGAACTTTTAG 999 0.4214 MGHRCCSKQKIKRGLWSPEEDDKLVRFITTHGHKSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTADEEQTIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGFDPQTHNLLSSHRRPSVSSSACINNSDNSIFKLSHEPDNLNVQSASSTIFSFEYHQQPSSINVSNSNIYESHTFSDPFESSINGKSAPNMPSYSCMTSNYYPSSVTGFSETDQNRVWVSRDDAEAENFRAQTLMGGGVVEAQIEQEKDKSTTTTTCCEKGVIEEVIREEADYNGCLEGSNNSNFDFGLLEGVLNSEYMSYDDLSSIDDLAWNF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0053 332 SMART sant 12 62 IPR001005 -
Dere08g0053 332 SMART sant 65 113 IPR001005 -
Dere08g0053 332 CDD SANT 68 108 IPR001005 -
Dere08g0053 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Dere08g0053 332 FunFam Myb transcription factor 10 66 - -
Dere08g0053 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Dere08g0053 332 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Dere08g0053 332 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Dere08g0053 332 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Dere08g0053 332 PANTHER MYB DOMAIN PROTEIN 55 1 258 - -
Dere08g0053 332 CDD SANT 16 60 IPR001005 -
Dere08g0053 332 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dere08g0053 332 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Dere08g0053 332 Gene3D - 67 136 - -
Dere08g0053 332 Gene3D - 10 66 - -
Dere08g0053 332 FunFam Transcription factor MYB86 67 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0053 Dere-ChrDere08 1539114 1541118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0053 1 133 MYB Transcription Factor Family AT3G12720 85.714 1.97e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g0053 Myb_DNA-binding 5.1e-14 CL0123