Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0052 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTTCACCCAACAGATGAAGAACTTGTTGCTTACTACTTGGAAAGAAAAATAACAGGCCGTTCTATAGAGCTTGAAATTATCCCTGAAGTTGATCTCTACAAATGTGAACCATGGGATTTGCCAGATAAATCGTTCTTGCCAAGCAAGGATATGGAGTGGTACTTCTACAGTCCAAGAGATAGAAAGTACCCAAATGGGTCAAGAACAAACCGAGCAACAAGAGCTGGATACTGGAAAGCCACTGGAAAAGATAGGGCAGTTCACTCTCAGAAACGCCAAGTAGGGATGAAGAAGACGTTGGTATATTACAGAGGAAGAGCCCCACATGGCATTAGAACCAACTGGGTCATGCATGAGTATCGCCTCACTGAATCACTTCCTGCTTCTACTTCTTCCTCCTTGAAGGATTCCTATTCATTGTGTCGTGTCTTCAAGAAGACAATTCAAATCCCGAAACCAAAAGAAGATCAAGAAGAAGAGCAAACTGAAAGTATTGCGATGAAGGGATCTAAGTCTGATTTGTGGGTCTCAGAAGAACAAGGATTAAGGGAGGATTCCAGTGGCTTTGAGATTTCAAGAGAAATGGAAATTGCAGATGAGAAAATTATTGTGAATCATGATGGTGACCATTCTAATAATAAATTTCATTATGATAATGCTTCTTCTTCGGATCTCACCCAAGGGACACCCACTGATCAAACTGGTATAGCAGATAATGATTTTCAAGCCCAATTTGCTTCTGATGAGGCAAATAGTGCAGCTAATCCGTATTCACTTGGAGTCGACTGTGCATCAAATCTATTTCAGGAAATGGAGCTGCAAATCTATGCAGGCATGCGTTATCAACTTCCATACCCACCCTTGGAGCTTGAAGATTTCCCACAAATAAATTTAGTAGAGACAGAGACAAAGCCAATGAAGCCTGAACAAATGATGAATGATTGCATGGTATATGACAAACACAGAGACTGTACTATGAGTGGAACACTGGAAGAGATCATCTCTTTGTGTTCCTCCCAAGACAATAACTCTTTGCCTCTCTCAATGCTAGATTGA 1089 0.4132 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELEIIPEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVHSQKRQVGMKKTLVYYRGRAPHGIRTNWVMHEYRLTESLPASTSSSLKDSYSLCRVFKKTIQIPKPKEDQEEEQTESIAMKGSKSDLWVSEEQGLREDSSGFEISREMEIADEKIIVNHDGDHSNNKFHYDNASSSDLTQGTPTDQTGIADNDFQAQFASDEANSAANPYSLGVDCASNLFQEMELQIYAGMRYQLPYPPLELEDFPQINLVETETKPMKPEQMMNDCMVYDKHRDCTMSGTLEEIISLCSSQDNNSLPLSMLD 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0052 362 MobiDBLite consensus disorder prediction 220 239 - -
Dere08g0052 362 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Dere08g0052 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 231 - -
Dere08g0052 362 FunFam Nac domain-containing protein 86 15 160 - -
Dere08g0052 362 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Dere08g0052 362 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Dere08g0052 362 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0052 Dere-ChrDere08 1530220 1534099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0052 1 346 NAC Transcription Factor Family AT1G54330 52.422 7.11e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere08g0052 NAM 6e-40 No_clan