Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0037 ATGGCCACTACCACTTCTACAACTGCCGCGCCTCCGCGCCAGCTATCCCAGAAGGAGGCTGACATCCAGATGATGTTAGCCGCGGAGGTTCACCTTGGGACCAAAAATTGTAATTTTCAAATGGAGCGATATGTCTTCAAGCGCCGCAACGATGGTATTTACATTATTAACCTTGGCAAGACATGGGAGAAGCTTCAGCTTGCTGCCAGGGTTATTGTTGCCATAGAGAACCCTCAGGATATTATAGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCAGTTCTTAAGTTTGCTCAATACACAGGTGCCCATGCACTTGCCGGAAGGCACACTCCAGGAACATTCACTAACCAGCTCCAGACGTCCTATAGTGAACCTCGCCTACTCATTCTGACTGATCCTAGAACAGATCACCAGCCCATCAAGGAAGCTGCACTTGGAAATATACCGACTATTGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGACATTGGCATTCCTGCCAACAATAAGGGGAAGCACAGCATTGGTTGTCTCTTCTGGCTATTAGCAAGGATGGTACTGCAGATGCGGGGTACTATTCGTCCAGGGCTTAAGTGGGACGTGATGGTGGACTTATTCTTCTACAGAGAACCTGAGGAGACCAAGCAACAGGAGGAAGATGAAGCACCTGTTGCCCCAGACTATGCCATTACAGACTTCAATGCTGCTGGCATTGCTGCTGATGGGCAGTGGCCTGCTGCTATTGATCAGCCATGGACTGATGCAACAATTCCACAGCCTATTCCAGCAGCTCCTGGTGTCAGTTGGGCCACAGATGCTGCTGGAGAATGGGGTGAATCTGTTCCAGCTCCACAAGTTCCTGTCCCCCAAATTCCTGCCCCTGGAACTGAGTCTGTGGCTGCCACTGGCTGGGATCAACTTTGA 933 0.5005 MATTTSTTAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKQQEEDEAPVAPDYAITDFNAAGIAADGQWPAAIDQPWTDATIPQPIPAAPGVSWATDAAGEWGESVPAPQVPVPQIPAPGTESVAATGWDQL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0037 310 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 NCBIfam 30S ribosomal protein S2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Dere08g0037 310 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Dere08g0037 310 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 PANTHER 40S RIBOSOMAL PROTEIN SA 12 289 IPR005707 GO:0003735|GO:0006412|GO:0015935
Dere08g0037 310 Gene3D - 21 226 - -
Dere08g0037 310 Hamap 40S ribosomal protein SA [rps-0]. 9 250 IPR027498 GO:0003735|GO:0006412|GO:0015935
Dere08g0037 310 MobiDBLite consensus disorder prediction 280 310 - -
Dere08g0037 310 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 FunFam 40S ribosomal protein SA 21 227 - -
Dere08g0037 310 Pfam Ribosomal protein S2 123 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere08g0037 310 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0037 Dere-ChrDere08 1324190 1326401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0037 1 286 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.653 7.57e-153 427