Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0030 ATGATGCAAGGAAGTGGACAAATAACAGTGCCTCCAGGGTTCAGGTTTCACCCTACAGATGAGGAGCTTCTATACTATTATCTGAGGAAGAAAGTCTCTTTTGAAGCCATTGACCTTGATGTCATCCGGGAAGTTGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGAAAAATGTAGGATCGGATCAGGGCCTCAGAACGATTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACGGGAACGCGAACGAATCGGGCGACAACGGCGGGGTTTTGGAAAGCAACGGGGAGGGACAAGGCCATATACCTCAGCAACTCCAAAAGGATTGGGATGAGGAAAACCCTCGTCTTCTACACTGGCCGTGCTCCTCATGGCCAAAAGACTGACTGGATCATGCATGAATATCGCCTTGACGAGCATGATGCTGAGGTTCAGGAGGATGGGTGGGTGGTGTGCAGGGTATTCAAGAAAAAGAATCTGAACAGAGGATTCCAACCAGAAATGGAACATGATCATGATGAGCAATTAAGAAGTGCTTCTAATAGCTGCATCAAGTTACTAGAACCATTCAAACAACACCACCATCATCATCATCATAACAATATTCGTCATCAAGGACTACCACTATTTGACCACTATAATAATAATAATGGATGCTTTGATGCCTCAATGCATCTACCACAGTTGTTCAGCCCAGAATCTGCAGTACCACCCTTTGCAACCTCATCATCCTCCTCCTCCATGAACCCCATGGACGCTCTTGACTGCTGTCACAACTTGCTCAGGCTCACAACAACCTGCACATCTACTGGAGGACTCGTTAATAATCTCATGCACCAACAGCAACATCCACAACAACAAGCTGATCATCTCAGACTGAGTGGGGACTGGTCTTTCTTGGACAAGCTCCTAGCTTCACAACAGCAACAACCAGTAGGGCCTGTGGGTGTTTCTGCTTCTTCTTCAACCCCCAAATTCCCATTTCATTACCTTGCTTGTGATCACAGTGGCATCATGAAGTAA 1029 0.4645 MMQGSGQITVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKEKCRIGSGPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEHDAEVQEDGWVVCRVFKKKNLNRGFQPEMEHDHDEQLRSASNSCIKLLEPFKQHHHHHHHNNIRHQGLPLFDHYNNNNGCFDASMHLPQLFSPESAVPPFATSSSSSSMNPMDALDCCHNLLRLTTTCTSTGGLVNNLMHQQQHPQQQADHLRLSGDWSFLDKLLASQQQQPVGPVGVSASSSTPKFPFHYLACDHSGIMK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0030 342 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Dere08g0030 342 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Dere08g0030 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 242 - -
Dere08g0030 342 Gene3D NAC domain 19 163 IPR036093 GO:0003677|GO:0006355
Dere08g0030 342 FunFam NAC domain-containing protein 19 163 - -
Dere08g0030 342 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0030 Dere-ChrDere08 1261967 1263492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0030 2 308 NAC Transcription Factor Family AT1G79580 57.231 1.30e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere08g0030 NAM 1.3e-37 No_clan