Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere08g0028 | ATGTCAGCATCTGCCATGGAACGAGCAAAAAGAGAAGCACAAACAGGTTGCTCTGCCTTTAGCTTTTATGTGTCTCACCACCCTGGCATTTCCTCTTCTTTTGGAAGTCCGGTGAACATAATCGTTGGATCACATGTCTGGGTTGAGGATCCTGAGGACGCTTGGATTGATGGTGAAGTCACAGAAATCAATGGCGGCGACGCCACCATTGTTACTACAAATGGGAAAACTATTGTTGCAGGCGTTTATAGTATATATCCTAAAGATACAGAGGCACCACCAGCAGGGGTTGATGACATGACCAAGTTAGCATACCTCCATGAGCCAGGAGTCCTGCATAACCTTGCTTGCCGTTTTGCTCTGAACGAGATATATACATATACTGGGAATATCTTAATAGCCGTAAATCCTTTCCGGAGACTGCCACACTTGTATGACATCCACATGATGGAGCAGTATAAAGGAGCAGCATTTGGAGAACTAAGCCCTCACCTTTTTGCTGTTGCAGACACTTGTTACAGGGCAATGATTAACGATCATGGAAGCCAGTCCATTTTGGTAAGTGGAGAGAGTGGAGCTGGTAAAACAGAGACAACAAAAATGTTGATGAGATATCTAGCTTTTATGGGGGGCAGATCTAATACAGAAGGGAGAACAGTAGAGCAACAGGTTTTGGAGTCCAATCCGGTGCTGGAAGCATTTGGGAATGCCAAAACTGTCAAAAATAATAATTCAAGTCGTTTTGGTAAATTTGTTGTAATCCAATTTGACAAGAATGGAAAGATTTCTGGAGCTGCAATTCGTACATATCTCCTTGAAAGGTCACGAGTTTGCCAGGTTTCTGACCCTGAGAGGAGCTATCACTGCTTTTACATGCTTTGTGCAGCACCACCCGAGGATGTCAAAAAGTACAAGTTGAGGGATCCTAGGACTTTTCACTATCTTAATCAATCAAACTGCTATGAAGTAGCAAATGTGGATGATGCAAAAGAATACTTAGAGACCAGAAATGCAATGGATATTGTAGGCATCAGCCAGGATGAACAGGATGCCATTTTTCGTGTGGTAGCTGCAATCCTCCATCTTGGAAACGTTGACTTCATCAAAGGGAAGGAAGTTGATTCTTCCAAATTGAAAGATGAGAAATCAATCTTCCACCTTCGCACTGTTGCAGAACTACTCATGTGTGATGAGAAAGCATTGGAAGACTCCCTTTGCAAGCGCGTCATAGTTACTCCTGATGGTAACATCACAAAACCACTAGACCCGGACTCTGCTGCATTAAGTCGAGATGCTTTAGCAAAGACTGTGTACTCTAGGCTGTTTGATTGGATTGTGGACAAGATAAACAGCTCAATTGGTCAAGATCCCAATGCAGCGAGCTTAATAGGAGTCCTTGACATTTATGGATTTGAAAGCTTCAAAATCAACAGTTTTGAGCAACTATGCATCAACCTAACAAATGAGAAGTTGCAACAACATTTTAACCAGCACGTGTTTAAGATGGAGCAAGAAGAGTACACAAAGGAGGAAATCAACTGGAGCTATGTAGAATTTGTAGATAATCAAGATGTTCTGGATCTTATCGAAAAGAAACCTGGGGGAATTATTGCTCTTCTTGATGAAGCCTGCATGTTCCCCAAGTCAACCCATGAGACATTTGCACAAAAATTGTATCAGACGTATAAAGCACACAAGCGCTTCAGCAAGCCAAAACTCGCTCGAACAGATTTCACAATTAACCATTATGCCGGAGATGTCATATACCAAGCAGATCAATTTCTTGATAAAAATAAAGATTATGTTGTTGCAGAGCATCAAGCTCTTCTAAATGCCTCCAAGTGCTCATTTGTTGCCAATCTTTTCCCTCCATTACCTGAGGAGACATCAAAACAATCAAAATTCTCTTCCATTGGCACGCGGTTCAAGCAACAACTGCAATCTCTAATGGACACATTGAACACAACAGAACCACATTACATCAGATGTGTGAAACCAAATACAGTTTTGCAGCCTGGAATATTTGAAAATTTCAATGTCTTAAACCAGTTGAGATGTGGGGGAGTGCTTGAGGCAATTCGGATTAGTTGTGCTGGATATCCAACAAAACGAACATTTGATGAGTTCCTTGATCGTTTTGGAATGCTAGCCCCCGATGTCCTAGATGGATCTGAGGAGAAAACAGCATGTATTGCCATATGTGACAAGATGGGATTAAAGGGCTATCAAATGGGAAAAACAAAAGTATTTCTCAGAGCTGGTCAGATGGCTGAATTAGATGCAAGAAGAGCCGAAGTCTTAGCTAAAGCTGCTAGATGCATACAGAGACAAATCAGAACACATTTGACCAGAAAAGAGTTCATCACTCTGAGAAAGGCCACAATTCATATCCAAAAATTATGGAGAGCAAAACTTGCACGTAAACTCTATGAGCATATGCGGAGGGAAGCAGCTTCTATCCGCATACAGAAACATGCACGTGCACACAGAGCAAGAATGCATTATACATCATTGCAAGCATCAGCAATAGTTATTCAGTCAGGGTTAAGAGCAATGGCAGCCCGAGATGAATACAGGTACAGACGAAGAACAAAGGCTGCAATCAAGGTTCAGACACAATGGAGAAGAGTTGAAGCTTTTTCTGCTTACAAACAACTGAAGAAAGCAACTATTACACTTCAATGTCTCTGGAGAGCCAGAGTAGCTAGGAAAGAGCTCAGAAAGCTACGGATGGCTGCTAGGGAAACAGGGGCACTAAAGGAGGCAAAGGACAAGTTGGAGAAGCGCGTTGAAGAGCTTACATGGCGACTAGAATTTGAAAAGCACCTGAGGATTGATCTTGAAGAAGCTAAAGGGCAAGAAATTGCAAAGTTACAGAATGCTTTGCATGAAATGCAAAGTCAGCTTGATGAAGCCCATGCTGCAATTATACACGAGAAAGAAGCAGCAAAACTAGCAATGGAATCAGCACCACCAGTCATCAAAGAGGTACCTGTTGTGGACAACACCAAGCTAGAGCTACTGACAAATAAAAACGTAGAGCTAGAGGATGAAGTAGAAGAGATGAAGAAGAAGATTGAAGAATTCGAGGAAAAGTATTCAGACTTACAAATAGAGTCTCAAGCAAGGTTGAAAGAGGCAGAAGAAGCACAGCTGAAAGCAACACAACTTCAGGAGACTATTGAAAGATTAGAATCAAATTTGTCCAACCTTGAGTCTGAGAATCAAGTTCTACGCCAGCAGGCTTTGGTTGAATCAAAAAATGAGGAACTCTCTGAGGAGCTTAAAACCCTCAAGGAGCAGGTAGCAAATCTAGAATCAGAGAATGAAGTTCTGCAGAAACAGGCAGCAGCTGCCGTGGAGCAGAAAGTTCATCCGGAAAAAATAGAAACAGAAGACCAGCAAGTTGATATTGTGGAGAAAATTCAACAGAATGTTAACCCAGATACAATAACTATACAAGTCAAGAATTTGGATAATGGAAACCAGACAGCAGAAGAATACCAAACAAGAAAAGAACCAAGACAACCTGTTTCCTTTCTTACGAAACAAAGATCGCTCACAGACAGGCAGCAGGAAAGTCATGATGCACTGCTCAAGTGTCTTGCAGAGGATAAGCGATTTGAGAATAACAGACCAGTTGTTGCTTGTATTATCTATAAAGCACTTCTTCAGTGGAGATCCTTTGAAACAGAGAAGACACATATATTTGATAAAATTATTCACACAATCCGATCATCTATAGAGAGTCAAGAAGGAATCAATGACCTAGCATATTGGCTCTCAACAACTTCCACATTACTGTTTTTTCTACAAAGCACACTCAAGGCCAGCAATACAACTAAGGCAGCATCTCGTAATCGAAACTCCCCTGCTACTTTATTTGGCAGAATGGCACAAGGCCTGCTTTTATCCTCTATGGGCATGGGGGTTTCAAGTGGCTACAGTGGAATGGTGGGCAAGCCAAATGAGCAATCTAAAGTGGAAGCCAAGTATCCAGCCATTCTATTTAAGCAACAATTAACCGCATATGTTGAGAAGATATATGGAATGATCCGTGACAGTTTAAAGAAAGAGATCAGTCCATTCCTAAATTTGTGCATTCAGGCACCAAGATCCACAAGGACCAGATCAGTACGAGGATCATCAAGAAACATCCACTCAAATATAGTGGCAAAACAACAGGCATCGAATATGCACTGGAAAAGCATTGTCAATAAGTTAGACCATACCTTGGGTATTTTGTCTGACAACTATGTTCCTCCCATGATTACAAGGAAGATTTTTAGTCAGGTTTTCTCTTTCATGAATGTCCAGCTTTTCAACAGTTTGTTGCTTCGTCGTGAGTGCTGTTCCTTTAGCAATGGAGAATATTTAAAGGCAGGTTTGCATGAGTTGGAACAATGGTGTATCAAAGCAACTGATAAGTTTGCTGGATCCTCTTGGGATGAACTCAAACACATACGCCAAGCTGTGGGCTTTTTGGTTTTGCATCAGAAGACACAAAAATCTTTGGATGAGATAACAAGTGAACTCTGTCCGGTTTTAAGTATTCCACAAATATATCGTATTGGTACTATGTTCTGGGATGACAAATATGGAGCACAGGGGTTATCTCCAGAAGTGATTAGCAGAATCAGAGTGCTTATGGCAGAAGACTCCATAAACATACCCAATAACTCCTTCCTTCTCGAAGTGGATTCCAGCATACCTTTCTCAATGGAGGAGATGTTCCGTTCAATGAGTGACATTCGCCTATCAGATATCGATGTGGATCCACCAACAATCTTAAGGCAAAGGTCTGACTTCCAATTCTTATTGCAACAAATGGATGGCGATTCTCAATGA | 4848 | 0.4146 | MSASAMERAKREAQTGCSAFSFYVSHHPGISSSFGSPVNIIVGSHVWVEDPEDAWIDGEVTEINGGDATIVTTNGKTIVAGVYSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFALNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAAFGELSPHLFAVADTCYRAMINDHGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSNTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVVIQFDKNGKISGAAIRTYLLERSRVCQVSDPERSYHCFYMLCAAPPEDVKKYKLRDPRTFHYLNQSNCYEVANVDDAKEYLETRNAMDIVGISQDEQDAIFRVVAAILHLGNVDFIKGKEVDSSKLKDEKSIFHLRTVAELLMCDEKALEDSLCKRVIVTPDGNITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTYKAHKRFSKPKLARTDFTINHYAGDVIYQADQFLDKNKDYVVAEHQALLNASKCSFVANLFPPLPEETSKQSKFSSIGTRFKQQLQSLMDTLNTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDVLDGSEEKTACIAICDKMGLKGYQMGKTKVFLRAGQMAELDARRAEVLAKAARCIQRQIRTHLTRKEFITLRKATIHIQKLWRAKLARKLYEHMRREAASIRIQKHARAHRARMHYTSLQASAIVIQSGLRAMAARDEYRYRRRTKAAIKVQTQWRRVEAFSAYKQLKKATITLQCLWRARVARKELRKLRMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRIDLEEAKGQEIAKLQNALHEMQSQLDEAHAAIIHEKEAAKLAMESAPPVIKEVPVVDNTKLELLTNKNVELEDEVEEMKKKIEEFEEKYSDLQIESQARLKEAEEAQLKATQLQETIERLESNLSNLESENQVLRQQALVESKNEELSEELKTLKEQVANLESENEVLQKQAAAAVEQKVHPEKIETEDQQVDIVEKIQQNVNPDTITIQVKNLDNGNQTAEEYQTRKEPRQPVSFLTKQRSLTDRQQESHDALLKCLAEDKRFENNRPVVACIIYKALLQWRSFETEKTHIFDKIIHTIRSSIESQEGINDLAYWLSTTSTLLFFLQSTLKASNTTKAASRNRNSPATLFGRMAQGLLLSSMGMGVSSGYSGMVGKPNEQSKVEAKYPAILFKQQLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRSTRTRSVRGSSRNIHSNIVAKQQASNMHWKSIVNKLDHTLGILSDNYVPPMITRKIFSQVFSFMNVQLFNSLLLRRECCSFSNGEYLKAGLHELEQWCIKATDKFAGSSWDELKHIRQAVGFLVLHQKTQKSLDEITSELCPVLSIPQIYRIGTMFWDDKYGAQGLSPEVISRIRVLMAEDSINIPNNSFLLEVDSSIPFSMEEMFRSMSDIRLSDIDVDPPTILRQRSDFQFLLQQMDGDSQ | 1615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere08g0028 | 1615 | ProSiteProfiles | Myosin motor domain profile. | 95 | 764 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere08g0028 | 1615 | Pfam | Myosin head (motor domain) | 97 | 752 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere08g0028 | 1615 | SMART | DIL_2 | 1427 | 1534 | IPR002710 | - | |
| Dere08g0028 | 1615 | FunFam | Myosin 2 | 345 | 460 | - | - | |
| Dere08g0028 | 1615 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 345 | 634 | - | - | |
| Dere08g0028 | 1615 | ProSiteProfiles | IQ motif profile. | 767 | 794 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 69 | 818 | IPR027417 | - | |
| Dere08g0028 | 1615 | ProSiteProfiles | IQ motif profile. | 815 | 841 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 818 | 915 | IPR027417 | - | |
| Dere08g0028 | 1615 | CDD | MyosinXI_CBD | 1189 | 1575 | IPR037975 | GO:0007015 | |
| Dere08g0028 | 1615 | ProSiteProfiles | IQ motif profile. | 886 | 915 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | ProSiteProfiles | Dilute domain profile. | 1238 | 1552 | IPR002710 | - | |
| Dere08g0028 | 1615 | Gene3D | Kinesin motor domain | 98 | 695 | IPR036961 | - | |
| Dere08g0028 | 1615 | FunFam | unconventional myosin-Va | 769 | 817 | - | - | |
| Dere08g0028 | 1615 | Gene3D | - | 285 | 343 | - | - | |
| Dere08g0028 | 1615 | Gene3D | - | 472 | 656 | - | - | |
| Dere08g0028 | 1615 | ProSiteProfiles | IQ motif profile. | 838 | 867 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | Gene3D | - | 765 | 817 | - | - | |
| Dere08g0028 | 1615 | Gene3D | - | 818 | 864 | - | - | |
| Dere08g0028 | 1615 | Gene3D | - | 865 | 914 | - | - | |
| Dere08g0028 | 1615 | PANTHER | MYOSIN | 87 | 1540 | - | - | |
| Dere08g0028 | 1615 | SMART | MYSc_2a | 89 | 765 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere08g0028 | 1615 | Coils | Coil | 909 | 943 | - | - | |
| Dere08g0028 | 1615 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 41 | 90 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere08g0028 | 1615 | Gene3D | - | 700 | 762 | - | - | |
| Dere08g0028 | 1615 | FunFam | Class V myosin | 472 | 621 | - | - | |
| Dere08g0028 | 1615 | Coils | Coil | 1005 | 1122 | - | - | |
| Dere08g0028 | 1615 | Pfam | IQ calmodulin-binding motif | 840 | 859 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | Pfam | IQ calmodulin-binding motif | 791 | 810 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | Pfam | IQ calmodulin-binding motif | 888 | 907 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | Pfam | IQ calmodulin-binding motif | 769 | 787 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | Pfam | IQ calmodulin-binding motif | 817 | 835 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | CDD | MYSc_Myo11 | 109 | 752 | IPR036018 | - | |
| Dere08g0028 | 1615 | SMART | iq_5 | 766 | 788 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | SMART | iq_5 | 862 | 884 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | SMART | iq_5 | 885 | 907 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | SMART | iq_5 | 789 | 811 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | SMART | iq_5 | 837 | 859 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | SMART | iq_5 | 814 | 836 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | Pfam | DIL domain | 1428 | 1531 | IPR002710 | - | |
| Dere08g0028 | 1615 | ProSiteProfiles | IQ motif profile. | 790 | 819 | IPR000048 | GO:0005515 | |
| Dere08g0028 | 1615 | FunFam | Myosin heavy chain | 285 | 340 | - | - | |
| Dere08g0028 | 1615 | FunFam | unconventional myosin-Va | 818 | 865 | - | - | |
| Dere08g0028 | 1615 | FunFam | unconventional myosin-Va | 866 | 913 | - | - | |
| Dere08g0028 | 1615 | Coils | Coil | 948 | 975 | - | - | |
| Dere08g0028 | 1615 | PRINTS | Myosin heavy chain signature | 515 | 543 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere08g0028 | 1615 | PRINTS | Myosin heavy chain signature | 229 | 256 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere08g0028 | 1615 | PRINTS | Myosin heavy chain signature | 182 | 207 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere08g0028 | 1615 | PRINTS | Myosin heavy chain signature | 125 | 144 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere08g0028 | 1615 | PRINTS | Myosin heavy chain signature | 462 | 490 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere08g0028 | 1615 | Pfam | Myosin N-terminal SH3-like domain | 42 | 79 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere08g0028 | Dere-ChrDere08 | 1219889 | 1231424 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere08g0028 | 149 | 1610 | Myosins gene family | AT2G31900 | 75.137 | 0.0 | 2281 |