Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0013 ATGTCCTCCACCATCGCCACTGCCGCTGTGCCGGAGACGGCGGATGTAGAAATGAAGACGTACTGGTGCCACGAATGCGACATGAGTGTTGCTCTGTCTTCCTCTTCTTCCTCTTCAACTTCGTCGTCGACTCTGCTCTGTCCCCATTGCCACACCCACTTCCTCGAGCTCATGGACTCCCCTCTCTTCCCTCAATCCGACTCCCACCCGTTCCCCTCTTCCCTTTCCCTCTTCGACACCCCTTACCTCCACCACATAATCCAGCACCATCTCATTTCCGACGACGAAGACGAGGAGGAGCAAGAGTCCGGCGACGTTTTCGAAGACCCACTATCTTTGCTCTCCCCACTACCGACAAAATCGAAACCATGCTCTGATTCTATACCCACTATTGTAGTTACCTCTTCCTTGCTATCGCAGCTTGACCCAGGAGGGGTTTTGTGTGCGATTTGCAAGGACCCAATTGGGGTTGGCGCTGAGGCTAAGCAGCTTCCTTGTAAGCATTTGTACCACTCCGATTGCATTACGCCTTGGCTGGAGCACCACAATTCATGCCCGCTTTGCCGGTTTCAGCTGGCCGGTGAACGAGAGGAGGAGGGGGTTTCTCAGGCGAGGAGGATCAGGAGGCAATTGAGAACTGCGATGATGAGGTTGTCTGAATTGATGGAAGAGGAGGATGATTTCTATGGTTTGAGGACTACTCTCAGTCACATTGCTAGTAGACACCGCGTTCTTTCTTCCGCTGTTACAGGGCATAGGGATGATGAGAACCCATCTATTTCCCTGGCTTCCACTCGGACCTCGGAACCGGATTCTACATCCGCTGGAAGCAATGGTATTAGATTTAGGGTGTTTGAATGTCAAAGAAATCTTGAAGGTGTGTCACCATTGATCGTCTAA 900 0.5178 MSSTIATAAVPETADVEMKTYWCHECDMSVALSSSSSSSTSSSTLLCPHCHTHFLELMDSPLFPQSDSHPFPSSLSLFDTPYLHHIIQHHLISDDEDEEEQESGDVFEDPLSLLSPLPTKSKPCSDSIPTIVVTSSLLSQLDPGGVLCAICKDPIGVGAEAKQLPCKHLYHSDCITPWLEHHNSCPLCRFQLAGEREEEGVSQARRIRRQLRTAMMRLSELMEEEDDFYGLRTTLSHIASRHRVLSSAVTGHRDDENPSISLASTRTSEPDSTSAGSNGIRFRVFECQRNLEGVSPLIV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0013 299 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Dere08g0013 299 MobiDBLite consensus disorder prediction 247 276 - -
Dere08g0013 299 Coils Coil 204 224 - -
Dere08g0013 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 82 192 - -
Dere08g0013 299 Pfam zinc-ribbon 20 58 IPR039525 GO:0061630
Dere08g0013 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 205 IPR013083 -
Dere08g0013 299 MobiDBLite consensus disorder prediction 252 276 - -
Dere08g0013 299 Pfam Ring finger domain 148 189 IPR001841 -
Dere08g0013 299 SMART ring_2 148 188 IPR001841 -
Dere08g0013 299 SUPERFAMILY RING/U-box 147 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0013 Dere-ChrDere08 984811 987760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0013 17 249 C3H Transcription Factor Family AT3G60080 37.358 9.62e-33 120