Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2210 ATGGATACGTCGACTTGCTTCTTCTGCAGTAGAATCCCAGCAAAATTGCCTTCAAGACCAAGTTTGCATTTCCGTTGTAATGCATCTAACGTGCCCTTTTCTTCAGTTCGGTCCCTCGGCCTATTCACTCGTAACAATGCCTACACCTTGTGCAGCTCATCCCCTTCCTTTGGCTTCCAACAACTCATTCGAAACGGGACCAACGGCAGCAACAGTGAAACGAAGCTTTCCAATAATACCAAAACCAGAAGACGACGTCGCTATAAAGAAAGTACCAAGCTTACTGATACTACTAACGCAACTAGCAGGAATGGGTCTTCCCGATTTCAATCTCAGTCACCCTTGCCAGTGGTATCGGCTGTGGACTTGAGCAACCAGATAGAAGAACAGGAGGAGAGCCAAGGCTTTGAGAGGGGGAGAGAAAGTGGCAATGAGGGACCGCTGAACGTGAGTGGCATCTGCCAGAATGGAGACCCACTTGGGCGGAAGGATCTTGGGAAAAGCGTAGTGAGGTGGATTCGGCATAGTATGAGGGCCATGGCTTCTGATTTTGCTTCCGCCGAAGCACAGGGGGAGTTCTCGGAGCTGTGGCAGCGTCTGGGACCGGGTCTCTCTTTCGTAATCCAGGCTCAGCCTTATCTGAATGCCGTTCCGATGCCTCTTGGCCTTGAAGTTGTCTGCTTGAAGGCCTGCACCCACTATCCCACTCTATTCGATCACTTTCAGAGGGAGCTGCGTGACGTACTTCAAGACCTCCAGCGTAAATCATTGGTCCAGAACTGGTGTGAAACCGAATCGTGGAAACTGCTAAAAGAGCTCGCCAATTCAGCTCAGCATAGGGCAATCGCAAGAAAGGTAGCCCAGCCAAAGCCTGTACAAGGCGTTTTAGGAATGAACATAGAGAAGGCCAAGGTAATACAACAAAGAATTGAGGAATTCACCAAGCGCATGTCAGAACTACTCCGAATAGAAAGGGATGCTGAGTTGGAGTTTACACAGGAGGAACTGGATGCTGTTCCTAGACCAGATGATACTTCTGACTCATCGAAACCAATTGAGTTTTTGGTCAGCCATGGTCAGGCTCAGCAAGAACTCTGTGACACCATCTGTAATTTAAATGCCATCAGTACATCAACAGGATTAGGAGGAATGCATTTGGTGTTATTCAAGGTTGAAGGGAAACACCGGTTACCACCTACTACACTTTCTCCTGGAGATATGGTTTGTGTGAGAACATGTGACAGCAGGGGTGCAGTCACAACTTCTTGCCTGCAAGGCTTTGTTAACAATCTTGGGGATGATGGCTGTAGTATCAGTGTTGCTTTAGAGTCACGTCATGGTGATCCTACATTCTCTAAACTCTTTGGGAAGAGTGTGCGCATTGACCGTATCCAGGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCTCTGATGTTGCTTCAGAAGAATGGTTTACAAAAGAAGAATCCTTCTATTGCTGTTGTGGCTACATTGTTTGGAGATGGGGAAGATGTTGCATGGCTTGAGAAAAATCGTTTGGCTAACTGGGATGAGGAAAACATGAATGGAATATTAGGGATTGAAACCTTTGATAGTTCCCAGCGAAGGGCAATAGCACTAGGTTTGAATAAAAACAGGCCTGTATTGGTTATCCAAGGGCCTCCTGGTACAGGAAAGACAGGTTTGCTCAAGCAACTTATAGCATATGCTGTTCAGCGAGGTGAAAGGGTTCTTGTAACAGCACCTACTAATGCAGCTGTTGATAACATGGTGGAAAAGCTTTCAAATATTGGATTAAACATTGTGCGGGTTGGCAATCCAGCTCGTATATCAAAAACTGTCGGATCAAAGTCCTTGGGAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGCAGAGTATGAAAGGAAGAAGTCAGATCTAAGGAGAGATCTTAGACATTGTTTAAAAGATGATTCATTAGCTGCTGGCATACGCCAACTTCTGAAACAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAGGAGACTATGAACGAAGTGCTATCTAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGATCCTTTGATTCGAAGGCTAGAAGCTTTTGACTTGGTTGTTATAGATGAAGCTGGACAGGCAATTGAACCTTCTTGCTGGATTCCCATATTGCAGGGAAAGCGTTGCATTCTTGCTGGTGATCAATGCCAACTAGCTCCAGTCATATTATCCAGGAAGGCCTTAGAAGGTGGTCTCGGAATATCTTTACTGGAAAGGGCTACAACTTTGCATGAAGGGGTCCTCACCACCAGGTTAGCAATACAATACCGAATGAATGATGCAATTGCTAGTTGGGCATCAAAGGAGATGTACGGCGGATTATTGAAGTCCTCTGAGACTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACATGGATAACGCAATGCCCTCTGTTGTTGCTTGATACAAGAATGCCATATGGAAGTTTATCAGTTGGTTGTGAAGAGCATCTAGACCCAGCTGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGATATTATTGTGCAGCATGTCTTTTCCTTAATTTGTGCTGGTGTCAGCCCAACAGCTATAGTAGTACAATCTCCTTATGTTGCTCAAGTGCAACTTTTGAGAGACATGCTGGATGAGCTTCCAGAGGCTGCTGGTACTGAGGTTGCAACTATTGATAGCTTTCAAGGTCGGGAAGCTGATGCAGTAATTATATCCATGGTACGTTCGAACACCTTAGGTGCTGTTGGATTCCTTGGTGATAGCAGAAGAATAAATGTTGCAATCACAAGGGCACGCAAACATGTAGCAGTGGTATGTGATAGCTCGACAATATGCCACAATACCTTCTTAGCAAGACTTCTGCGTCATATCCGCCATTTTGGTAGGGTGAAGCATGCAGAACCCGGTAGTCCTGGAGGCTCTGGACTGGGCATGAATCCAATGTTACCCTCCATAAATTAG 3024 0.4563 MDTSTCFFCSRIPAKLPSRPSLHFRCNASNVPFSSVRSLGLFTRNNAYTLCSSSPSFGFQQLIRNGTNGSNSETKLSNNTKTRRRRRYKESTKLTDTTNATSRNGSSRFQSQSPLPVVSAVDLSNQIEEQEESQGFERGRESGNEGPLNVSGICQNGDPLGRKDLGKSVVRWIRHSMRAMASDFASAEAQGEFSELWQRLGPGLSFVIQAQPYLNAVPMPLGLEVVCLKACTHYPTLFDHFQRELRDVLQDLQRKSLVQNWCETESWKLLKELANSAQHRAIARKVAQPKPVQGVLGMNIEKAKVIQQRIEEFTKRMSELLRIERDAELEFTQEELDAVPRPDDTSDSSKPIEFLVSHGQAQQELCDTICNLNAISTSTGLGGMHLVLFKVEGKHRLPPTTLSPGDMVCVRTCDSRGAVTTSCLQGFVNNLGDDGCSISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLQKKNPSIAVVATLFGDGEDVAWLEKNRLANWDEENMNGILGIETFDSSQRRAIALGLNKNRPVLVIQGPPGTGKTGLLKQLIAYAVQRGERVLVTAPTNAAVDNMVEKLSNIGLNIVRVGNPARISKTVGSKSLGEIVNAKLASFRAEYERKKSDLRRDLRHCLKDDSLAAGIRQLLKQLGRSLKKKEKETMNEVLSSAQVVLATNTGAADPLIRRLEAFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERATTLHEGVLTTRLAIQYRMNDAIASWASKEMYGGLLKSSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSFYNEGEADIIVQHVFSLICAGVSPTAIVVQSPYVAQVQLLRDMLDELPEAAGTEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSPGGSGLGMNPMLPSIN 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2210 1007 Gene3D - 336 467 - -
Dere07g2210 1007 MobiDBLite consensus disorder prediction 986 1007 - -
Dere07g2210 1007 Coils Coil 310 330 - -
Dere07g2210 1007 FunFam DNA-binding protein SMUBP-2 isoform X2 336 467 - -
Dere07g2210 1007 MobiDBLite consensus disorder prediction 94 115 - -
Dere07g2210 1007 SMART AAA_5 548 763 IPR003593 GO:0016887
Dere07g2210 1007 MobiDBLite consensus disorder prediction 62 115 - -
Dere07g2210 1007 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 174 991 - -
Dere07g2210 1007 CDD DEXXQc_SMUBP2 533 782 - -
Dere07g2210 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 970 IPR027417 -
Dere07g2210 1007 Coils Coil 634 654 - -
Dere07g2210 1007 Coils Coil 658 678 - -
Dere07g2210 1007 SMART ultradead3 529 782 IPR014001 -
Dere07g2210 1007 Pfam AAA domain 533 749 IPR041677 GO:0004386
Dere07g2210 1007 MobiDBLite consensus disorder prediction 128 155 - -
Dere07g2210 1007 CDD SF1_C_Upf1 783 979 IPR047187 -
Dere07g2210 1007 MobiDBLite consensus disorder prediction 62 77 - -
Dere07g2210 1007 FunFam DNA helicase A 781 989 - -
Dere07g2210 1007 Gene3D - 781 989 IPR027417 -
Dere07g2210 1007 Pfam AAA domain 759 962 IPR041679 -
Dere07g2210 1007 Gene3D - 316 765 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2210 Dere-ChrDere07 38683996 38697049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2210 519 722 Core DNA Replication Machinery Family AT1G08840 27.184 4.67e-08 55.5