Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2202 ATGACAGACACACCAACCCCAAAGACCCCGATGCACAGACATGAAGTTGCTGCCACATATTAAACACCTGCTCTGGCTATTCTTCCTTTTGATGCAGAAATGGTAGTTATAAGCTTTGAAGTATGTGGAAATTCTGCTTTTACTCTGCATTATTATGGAAATTCGTTTCCTTTATATGGGGTTTCGATTTCTTGGAGACCTTTTGCTGCTAAAGCTTTGAACACGAGAAATGCAAGGAAAATTCAAATTTTTCATGCTCAAAATCTCAATTATGTACCAGTTAGTGCTTCGCTGAAGAGTGGCTCAAATGCCGGGTTGATTAGTGATGGTCTTCTTTCAAATGAATTAGAGTTTAAGCCATCCTTCGATGATTATTTGAAGGAAATGGAATCTGCTAGAACTGTCAGGGGCAAGGAAATGGAGTCTGCCAGAACTGTCAGGGAAATGGAGTCTTCCAGAATTGTTAGGGGTAAGAAGCATGCTAGCAGTACCATAAAACAGAGGGGGGAAAAGGGTATGTCGGGGAAACCAAGGTTTGAGGGAGATGAAGGAAGTAACAAAATTGGAAAGCTTGGAAGGCGCACGGATAAAACAAGAGAGTTCAAAATAGCGAAAAATGATGGGACATTACAAGTTATTGAAACAGTCATGGGCAAGGAAAGGTCCTCCATAGGTCAGGTTAAGCTCAGAGGACGAGGAGCTAAAAAATTTAAACATGAGTATGATGGGGAAGAAAGCAAACCTTGTATTACTGGAAAGCGGAAAAAGGGGGCAGAGATAATGGAAGATGGATGGTTGAAACACCAGAATAATGAATCAAAATCTGACTCTGTTGACAGCAATTTAATTAGGAGTGAAAGTGGAAGGATAGGCAATAGCAAAGCTTGGCTTAATTGGAATAATAACCGTGGCAACATCATAGAGAGGGAAGTCAGTCAAGAATTACAATCTTTAAAGATGGTAGGAGAAAAAGATGTTACTACCAGCCAAAGGGAAGGCAACTCAAAAGGGAAAACGCCTATAATAGATAAAATTGTTGTTAGCAACAATGTTACGCACAATAGACTTGAGAGAAGCTACACGAAAAATGAGAAAGTGGTGGAAGAAAATGGACATGAAAATGTCAAATTGAATGGAAGCAGTAAGAAATTCCTTGATAGGGGTTATGATTATGACAACTTGGAGGTGGAAAGAGCGGCATTTAAGACTTTTGAGGAGTTCAATGGTGTTGTCGGCAAACCACAAGTTTCACACAAGGAAATGGAGGATAGAATCCAAAGGCTAGCAAAATCGTTGAATGGTGCAGATATCAATATGCCTGAATGGATCTTTTCTAAGATGATGAGAAGTGCAAAGATAAAATTTAATGACTATTCTATTGTGAGGGTTATTCAAAGATTGGGAAAACTAGGAAACTGGCAGCGGGTGATACAGGTCATTGAATGGCTTCAAAGGCGTGAGCGTTTTAAATCCCATAAGCTATGGCACATATACACTGCTGCTCTTGATGCAATTGGAAAGGCAAGGAGACCCGTAGAGGCTCTAAATGTATTTCATGCAATGCAGCAACAAATGTCCACATATCCTGACTTGGTAGCTTATCATAGTATTGCTGTCACTCTTGGTCAAGCGGGGCACATGAAGGAACTCTTTGATGTGATTGACATCATGCGATCGCCACCTAAGAAAAAGTTCAAATTAGGGACACTTGGGAAGTGGGATCCTAGGCTGGAACCGGATATCTTGGTTTATAATGCAGTCCTCAATGCTTGTGTTCAGCAGAAAAAATGGGAGGGGGCCTTTTGGGTTTTACAGCAGTTAAAGGAGCAAGGGCAACAACCGTCTGCTACTACTTATGGCCTTGTCATGGAGGTGATGTTTACATGTGGCAAGTACAACTTAGTTCATGAATTTTTCAGGAAGGTTCAGAAGTCTTCTATTCCCAATTCGTTGACATATAGAGTTCTTGTGAATACACTATGGAAAGAGGGTAAAACTGATGAGGCTATATTGGCTGTCCAAGAGATGGAAGGACGTGGAATTGTAGGTTCTGCTTCTCTTTATTATGACCTTGCTCGATGTCTTTGTGCAGCTGGAAGATGTAGTGAGGCACTGATGCAGATAGAGAAGATATGTAAGGTTGCAAACAAGCCGCTTGTGGTGACCTACACTGGCTTAATTCAAGCATGTCTGGAATCTGGAAACATCCTTGATGGGGCATACATCTTTGAAAAAATGAAGGATATTTGCTCTCCAAATCTTGTTACTTGTAACATGATGCTGAAAGCTTACCTCGAAAATGGGATGTTTCTAGAAGCAAAAGAATTGTTTGAGAAGATGTTAGAAAACGCAAATCATGTGAGGAGAAATTCTGATTACAAAACTTGGGTGATACCGGATATTTACACCTTCAACACCATGTTAGATGCATGTATTGTAGAGCAGAGATGGAATTATTTCAACTATGTCTATCAGAAGATGCTATACCATGGTTACCACTTCAATCCAAAACGTCATCTTCGAATGATACTGGAGGCATCAAGAGCTGGAAAGGAAGGGCCAATTGAAACTACGTGGAAGCACTTGATCCATATTGATCGTATTCCACCAGCTCCTCTAATAAAGGAAAGATTCTGTATGAAGCTTGAAAAAGATGACCATGTTGAAGCTCTTACATGTATCACCAATAATCTATCCAAAGACTTGCAGGCATTTTCCAAGTTGTCATGGTTGAATCTATTCAAAGAAAATGCTCAACGTTTTCAGAAGGATACTCTTGTTAGGTTAATGGATGAGGTTAACATCTTAGTTTCTAAAAGTAGCTTGCCACTTCCAGCACTTGAAGCACTTGAGAATCTAATGCAATCTTGGAGAGAATTTTGTAGCACCGACCTTAGTGTAACTGAAATGGAACAGTCGGTTAACTCTAGATGA 2934 0.4018 MTDTPTPKTPMHRHEVAATYXTPALAILPFDAEMVVISFEVCGNSAFTLHYYGNSFPLYGVSISWRPFAAKALNTRNARKIQIFHAQNLNYVPVSASLKSGSNAGLISDGLLSNELEFKPSFDDYLKEMESARTVRGKEMESARTVREMESSRIVRGKKHASSTIKQRGEKGMSGKPRFEGDEGSNKIGKLGRRTDKTREFKIAKNDGTLQVIETVMGKERSSIGQVKLRGRGAKKFKHEYDGEESKPCITGKRKKGAEIMEDGWLKHQNNESKSDSVDSNLIRSESGRIGNSKAWLNWNNNRGNIIEREVSQELQSLKMVGEKDVTTSQREGNSKGKTPIIDKIVVSNNVTHNRLERSYTKNEKVVEENGHENVKLNGSSKKFLDRGYDYDNLEVERAAFKTFEEFNGVVGKPQVSHKEMEDRIQRLAKSLNGADINMPEWIFSKMMRSAKIKFNDYSIVRVIQRLGKLGNWQRVIQVIEWLQRRERFKSHKLWHIYTAALDAIGKARRPVEALNVFHAMQQQMSTYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKLGTLGKWDPRLEPDILVYNAVLNACVQQKKWEGAFWVLQQLKEQGQQPSATTYGLVMEVMFTCGKYNLVHEFFRKVQKSSIPNSLTYRVLVNTLWKEGKTDEAILAVQEMEGRGIVGSASLYYDLARCLCAAGRCSEALMQIEKICKVANKPLVVTYTGLIQACLESGNILDGAYIFEKMKDICSPNLVTCNMMLKAYLENGMFLEAKELFEKMLENANHVRRNSDYKTWVIPDIYTFNTMLDACIVEQRWNYFNYVYQKMLYHGYHFNPKRHLRMILEASRAGKEGPIETTWKHLIHIDRIPPAPLIKERFCMKLEKDDHVEALTCITNNLSKDLQAFSKLSWLNLFKENAQRFQKDTLVRLMDEVNILVSKSSLPLPALEALENLMQSWREFCSTDLSVTEMEQSVNSR 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2202 977 SUPERFAMILY HCP-like 589 783 - -
Dere07g2202 977 Pfam PPR repeat family 579 622 IPR002885 -
Dere07g2202 977 NCBIfam pentatricopeptide repeat 583 615 IPR002885 -
Dere07g2202 977 NCBIfam pentatricopeptide repeat 755 783 IPR002885 -
Dere07g2202 977 Gene3D Tetratricopeptide repeat domain 711 862 IPR011990 GO:0005515
Dere07g2202 977 Coils Coil 418 438 - -
Dere07g2202 977 MobiDBLite consensus disorder prediction 165 191 - -
Dere07g2202 977 PANTHER OS01G0674700 PROTEIN 56 966 IPR044645 GO:0009658
Dere07g2202 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Dere07g2202 977 Pfam Pentatricopeptide repeat domain 719 764 IPR002885 -
Dere07g2202 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 753 783 IPR002885 -
Dere07g2202 977 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 649 683 IPR002885 -
Dere07g2202 977 Pfam PPR repeat 652 681 IPR002885 -
Dere07g2202 977 Pfam PPR repeat 497 523 IPR002885 -
Dere07g2202 977 FunFam Pentatricopeptide repeat-containing protein 423 569 - -
Dere07g2202 977 Gene3D Tetratricopeptide repeat domain 644 710 IPR011990 GO:0005515
Dere07g2202 977 Gene3D Tetratricopeptide repeat domain 487 643 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2202 Dere-ChrDere07 38538779 38551546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2202 463 831 Glycosyltransferase AT1G05670 22.133 6.69e-16 80.5