Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2188 ATGAGCAACATAAGCATGGTCGAGGCAAAGTTGCCCCCAGGTTTCAGGTTTCATCCCAGAGATGAAGAACTCGTGTGTGATTACTTGATGAAGAAGGTCACACACTGCGATCCCCCTCTCATGATTGATGTTGACCTTAACAAGTGTGAACCTTGGGATATTCCAGGTTCTGAATTTGAACGAAGGGTATTCTACAAAAACAGAGAAGATATCGTAAAAGCTAACACGGGAAGCTGCTATGACGACACTGGCTCTTCGTCTCTTCCCGAATTAATGGACTCTTACATCAGTTTTGATCAACCTGCACCTCATCACCATCAATACGAGCAAGTGCCCTGCTTCTCCACTCTTTTCTCTCATCATCATCATCATCAAGCCCAAACAACAAACCCTCATAATAATAATAATACTAATACTATTGTCATGGATCAGCAAAACCTATTAGGTGCACCAAAGAGTACCAATACAGCCACAGCAATCACGTATGGAGGAGGAACAGTATTACCCAATCATTTGGGATCTTCTAATTCTGATTCTACTTCTAATTGCTTAGACCCTTTTTCCTGTGACAGAAAGGTACTCAAAGCTGTGTTGACTCAGCTCACAAAGATGGAACCTCAAAAAGGGTCACCAAGCTTTGCAGATCATCAGAGAAGTCATCATCATTCTGAGGCTTATCTATCTCAAGTCCCTATTCCCAATTTATGGAACAATTACTGA 720 0.4181 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHCDPPLMIDVDLNKCEPWDIPGSEFERRVFYKNREDIVKANTGSCYDDTGSSSLPELMDSYISFDQPAPHHHQYEQVPCFSTLFSHHHHHQAQTTNPHNNNNTNTIVMDQQNLLGAPKSTNTATAITYGGGTVLPNHLGSSNSDSTSNCLDPFSCDRKVLKAVLTQLTKMEPQKGSPSFADHQRSHHHSEAYLSQVPIPNLWNNY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2188 239 Pfam No apical meristem (NAM) protein 12 65 IPR003441 GO:0003677|GO:0006355
Dere07g2188 239 ProSiteProfiles NAC domain profile. 11 144 IPR003441 GO:0003677|GO:0006355
Dere07g2188 239 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 58 - -
Dere07g2188 239 Gene3D NAC domain 20 86 IPR036093 GO:0003677|GO:0006355
Dere07g2188 239 SUPERFAMILY NAC domain 2 62 IPR036093 GO:0003677|GO:0006355
Dere07g2188 239 MobiDBLite consensus disorder prediction 203 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2188 Dere-ChrDere07 38223000 38227049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2188 2 55 NAC Transcription Factor Family AT1G56010 75.439 9.70e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere07g2188 NAM 2.6e-12 No_clan