Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2172 ATGAAGGAAGGTGGAAGAAAACATGGTGCAATGTCGCCATGTGCGGCATGCAAGCTTCTTCGAAGGAGATGTGCTCAGGATTGCCTCTTTGCTCCTTATTTTCCTGCGGATGAACCCCAGAAGTTTGCAAGTGTGCACAAGGTTTTTGGGGCAAGCAATGTCAACAAAATGTTACAGGAACTGCCAGAGGAGCAAAGGAGTGATGCAGTGAGTTCAATGGTATACGAAGCAAATGCAAGAGTGAGGGACCCAGTGTATGGGTGTGTGGGAGCCATATCCAGTCTTCAGCAACAAGTTGATGTGCTTCAAACCCAATTGGCTCTCGCTCAGGCTGAGCTTGTTCACATCAGAATGCACCAATTCAACTCTTCTTCTTCCTCCTCAGCTTCACACCACCTTCAACCACAGTCATCTCATGACACCAAGTCTTCTCTTTTTGCCATGAACAACATGGGCGAGTCCTTGTGGTCTTGCTAG 477 0.478 MKEGGRKHGAMSPCAACKLLRRRCAQDCLFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEEQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAELVHIRMHQFNSSSSSSASHHLQPQSSHDTKSSLFAMNNMGESLWSC 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2172 158 Coils Coil 92 112 - -
Dere07g2172 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 138 - -
Dere07g2172 158 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Dere07g2172 158 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2172 Dere-ChrDere07 38078071 38081351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2172 1 158 AS2 family AT1G31320 65.909 1.82e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere07g2172 LOB 1.6e-43 No_clan