Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2171 ATGCCCCTATCTCCTTCTTCAATGGCTGCCTTTCCTCAATTCTATTCAAACTACTCAATATTCCCTAGTGATATCACAGAGTTTCCAACCCAAGGAGCCATTAATGGCAATATTAATAATTACTCAGTTATAGAGAGTAGAATGTGTGGCCATCAAGATAGCTTCAATAATATTCCCAATGGCGCACTTGAACATATTTCTTCAGTACTGGAGTGTGATACTATGGCTTCGACTTGGGTTCCTTCTTTTTCCGACCAACTCGGGGGCATATCGGACTTGGCCATTCCGGCGATTTACGGTGGCGGCGCCAATGGCATTAATGGTGGTTTTCAGAATTTGAATGGTGGTGGATACCTTCCACATCATCTGGGTGATTATGGTGAAGAATGTTGTGGGTTTGTGGAGGATATTAAGCCACCTCCATATCATAACACTGCCACAGAAAACTGGGGATCATATCAAGGAAATCAAATACCGGCAGCTGAAGAACCAAACATAAAGGTAGGAAGATACTCTGAAGAAGAAAGGAAGGAAAGAATTCTCCGATACTTGAAGAAAAGAAATCAAAGGAACTTCAATAAAACAATCAAGTATGCTTGTCGGAAAACCCTGGCTGATCGGAGAGTAAGAGTAAGAGGAAGGTTTGCAAGAAACAACGAGCTGTGTGAGGATGAAATCACTATGAAGAAGAATGAGAATATTCCTCACAAACATGACTTGTATGGCGGTGATGATTCTATCCAATTTCAGTTAAAGAATGATTATGAAGAGGAAGATTGGCTGCAAGAGGCAATGGCAAGTCTGGTGTATCTATCTCATTCTTCGCCAGAAGATATATAG 840 0.4119 MPLSPSSMAAFPQFYSNYSIFPSDITEFPTQGAINGNINNYSVIESRMCGHQDSFNNIPNGALEHISSVLECDTMASTWVPSFSDQLGGISDLAIPAIYGGGANGINGGFQNLNGGGYLPHHLGDYGEECCGFVEDIKPPPYHNTATENWGSYQGNQIPAAEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEDEITMKKNENIPHKHDLYGGDDSIQFQLKNDYEEEDWLQEAMASLVYLSHSSPEDI 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2171 279 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 141 233 IPR045281 GO:0009909
Dere07g2171 279 Pfam CCT motif 176 218 IPR010402 GO:0005515
Dere07g2171 279 ProSiteProfiles CCT domain profile. 176 218 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2171 Dere-ChrDere07 38059839 38061127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2171 172 228 C2C2-CO-like Transcription Factor Family AT5G57660 47.368 1.09e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere07g2171 CCT 8.7e-17 CL0281