Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2153 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAGAGCAAAGTGAAGAGAGGACCTTGGAGCCCCGAAGAAGACCTTAAGCTCATCAACTTCATCCACAAACATGGCCATGAAAACTGGAGAGCTCTTCCTAAACTAGCAGGACTTGTACGGTGTGGGAAAAGTTGTCGTTTGAGATGGATCAACTACTTGAGGCCTGATGTGAAGAGAGGCAATTTTACTAAAGAAGAAGAAGAAACCATAATAAGACTACACGAGGCTTTAGGAAACAAGTGGTCAAAGATTGCATCCCTTTTGCCTGGTAGGACAGACAATGAGATCAAGAATGTGTGGAACACTCACTTGAAGAAAAGATCGAAGCCCAAGTCTTCGCAGTCTAATGTTGCAGATGAATCATCCATCACCACTCTGTCCTCTGATTCATTTTCCTCTGAGAAAACTGAGCAAGATTCAGAAAAACAAGTTTCCAATGAACTCATTAATGGCATCACAGAGGACCCAAAAGAGTCACCAGCTTCATTTTCTTCTACTGATCATTCTGATCTCTCAAAGCCAGAAGAACATGTTATGGATTCTCTGTTTGACTATCTCACAGAAGATCACAACCATCTGCTTGAAATACCAATGGAGACATCAGACTATGATATTTGGAACATTCTAGACTGTCCACAATCCTTCCAGTCAAATGGTGTCCAAAACTCAAACAATCTAAGGCCAGTGATCAGTGGTGCTGAAGATGCTGAAAAGAGTAACTGGTTCCATGAATTGGAGAATGAGCTTGGATTAGGAGCAACAGAGGAATTTCCAAAGAATGATGATGTAGACATGGCATTTTTTGAATCATCATGGTCCTCTTGGCCTGAAATTACTGGTCTTTGA 876 0.4155 MGKGRAPCCDKSKVKRGPWSPEEDLKLINFIHKHGHENWRALPKLAGLVRCGKSCRLRWINYLRPDVKRGNFTKEEEETIIRLHEALGNKWSKIASLLPGRTDNEIKNVWNTHLKKRSKPKSSQSNVADESSITTLSSDSFSSEKTEQDSEKQVSNELINGITEDPKESPASFSSTDHSDLSKPEEHVMDSLFDYLTEDHNHLLEIPMETSDYDIWNILDCPQSFQSNGVQNSNNLRPVISGAEDAEKSNWFHELENELGLGATEEFPKNDDVDMAFFESSWSSWPEITGL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2153 291 Gene3D - 15 68 - -
Dere07g2153 291 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Dere07g2153 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 223 - -
Dere07g2153 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Dere07g2153 291 MobiDBLite consensus disorder prediction 124 143 - -
Dere07g2153 291 CDD SANT 71 114 IPR001005 -
Dere07g2153 291 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Dere07g2153 291 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Dere07g2153 291 CDD SANT 18 63 IPR001005 -
Dere07g2153 291 FunFam Transcription factor RAX3 9 69 - -
Dere07g2153 291 MobiDBLite consensus disorder prediction 111 183 - -
Dere07g2153 291 SMART sant 68 116 IPR001005 -
Dere07g2153 291 SMART sant 15 65 IPR001005 -
Dere07g2153 291 MobiDBLite consensus disorder prediction 153 178 - -
Dere07g2153 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Dere07g2153 291 Gene3D - 71 153 - -
Dere07g2153 291 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Dere07g2153 291 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2153 Dere-ChrDere07 37773941 37776624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2153 1 261 MYB Transcription Factor Family AT1G79180 49.355 5.90e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere07g2153 Myb_DNA-binding 2e-15 CL0123