Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2143 ATGGGAGACTTGATCCTGAGCCAGGTCATATCTGAGCCCAGAACAGGGCATTTTGTCTATACAGCACTAAAAGTAAACACAAACATTTGGTTGGGCTACTTGTGTTGTATGGCTTCTTCTATACAATCAGTTTCTACGGATGAGCCAGTTGTTACTGTGGATTGGCTCTATGCTAACCTTAAGGACCCTGACGTGAAGGTGCTGGATGCATCCTGGTATATGCCAGATGAGCAGAGGAACCCAATTCAAGAATATCAGGCTGCTCACATTCCTGGGGCCCTTTTCTTTGACATAGATGGAATAGCAGATCGAACTACAGATTTGCCACACATGTTGCCATCAGAGGAAGCTTTTGCTGCTGCGGTTTCTACTTTTGGTATAGCAAACAAAGATGGAGTGATTGTTTATGATGGCAAAGGGATATTTAGTGCAGCTCGAGTCTGGTGGATGTTTCGAGTGTTTGGGCATGACAAAGTTTGGGTTTTAGATGGTGGACTGCCAAGATGGCGTGCATCAGGATATGACATTGAATCTAGTGCTTCTAGTGGTGCTATATTAAAAGTCAGTGCTACAACTGAGGCAATAGAGAAAGTATATCAGGGACAATCAGTTGGCCCAATCACATTTCGGACTAAATTTCAGCCACATCTTGTTTGGTCCCTGGAACAGGTCAAGAGAAACATTGAGGAAAAAAGCCACCAACACATAGACGCACGATCAAAACCCAGGTTTGATGGAGTAGCACCAGAACCCCGAAAGGGGATCAGAAGCGGTCATATATGTGGCAGCAAATGCATTCCTTTTTTCCAGTTGTTGGATGCTTCACAGACACTATTACCGGCAGATGAACTTAAGAAGCGATTTGATCAAGAAGGCGTCACTTTGGATGGCCCAATTGTGACATCATGTGGCACTGGTGTAACTGCTTGCATTCTTGTATTGGGCCTCCATCGTCTTGGAAAGTCTGATGTTGTACTCTATGATGGATCTTGGACTGAATGGGCATCGCAATGTGAGACAGCTATTGAAACTTCATGA 1038 0.4441 MGDLILSQVISEPRTGHFVYTALKVNTNIWLGYLCCMASSIQSVSTDEPVVTVDWLYANLKDPDVKVLDASWYMPDEQRNPIQEYQAAHIPGALFFDIDGIADRTTDLPHMLPSEEAFAAAVSTFGIANKDGVIVYDGKGIFSAARVWWMFRVFGHDKVWVLDGGLPRWRASGYDIESSASSGAILKVSATTEAIEKVYQGQSVGPITFRTKFQPHLVWSLEQVKRNIEEKSHQHIDARSKPRFDGVAPEPRKGIRSGHICGSKCIPFFQLLDASQTLLPADELKKRFDQEGVTLDGPIVTSCGTGVTACILVLGLHRLGKSDVVLYDGSWTEWASQCETAIETS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2143 345 Gene3D - 215 343 IPR036873 -
Dere07g2143 345 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 48 180 IPR036873 -
Dere07g2143 345 Gene3D - 43 184 IPR036873 -
Dere07g2143 345 CDD TST_Repeat_1 50 173 - -
Dere07g2143 345 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 214 343 IPR036873 -
Dere07g2143 345 SMART rhod_4 219 340 IPR001763 -
Dere07g2143 345 SMART rhod_4 51 175 IPR001763 -
Dere07g2143 345 PANTHER THIOSULFATE SULFERTANSFERASE 47 344 IPR045078 GO:0016783
Dere07g2143 345 Pfam Rhodanese-like domain 221 336 IPR001763 -
Dere07g2143 345 Pfam Rhodanese-like domain 52 171 IPR001763 -
Dere07g2143 345 ProSiteProfiles Rhodanese domain profile. 229 343 IPR001763 -
Dere07g2143 345 FunFam Sulfurtransferase 214 345 - -
Dere07g2143 345 FunFam Sulfurtransferase 43 185 - -
Dere07g2143 345 ProSitePatterns Rhodanese signature 1. 85 96 IPR001307 GO:0004792
Dere07g2143 345 ProSiteProfiles Rhodanese domain profile. 61 178 IPR001763 -
Dere07g2143 345 Coils Coil 221 241 - -
Dere07g2143 345 CDD TST_Repeat_2 220 336 - -
Dere07g2143 345 ProSitePatterns Rhodanese C-terminal signature. 324 334 IPR001307 GO:0004792
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2143 Dere-ChrDere07 37592265 37601010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2143 40 344 Sulfurtransferasese or Rhodanese AT1G79230 77.377 0.0 513