Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2142 ATGAAGATGAGAAGTTCAGCAATGTTGATGCTGCTTATGGTTTGGTTAACTGCAGCAAGAACAAACGAGTCTGTATCTGCGCAGAGGAAGATCAACATAGATTCAATGTCTGATGATTCAGACAACTATTGGAAGGTCGAAAGTTCGATGTTGGGAGGAAAGAAGACGGGGGAAAAAATAGAATATGACTGGGAATGCATTACCAAGTCTGTGGCTCAGTGCGCGGAGCACGTGCATGTGCGTTTTGTTTTGACTCAGATGGCACTGACCTCGTACTTCAACTTCGAAAATACTCTCCAAGCTGATCTGAACCTAGAAGCGAGTATCTTCCATGAAGCAACACCAGAAGAAGAAGTACAAGTAGCAGCAGATTATAACCACCACCTTCTTCTTCCTTATTTTCATAATTCACATGAAAATTACTCCTTCTTTGATCCAAACACCTTCTTTCTCGAACCTTCCAGTACGGCTAATAGTTTTCTCTACCCTCATGAGCTTCTTCCCTATGACCCCCTAATGTACGAAGAACATTATAGCAACCTCCTTCCATGCCCTAAACGCCAAAAGTACTTCTCCTATGATCAGAGTTTGACGGACCTTATCACACCAACCAATAATTGTTTTGATGGGAATGTTGTTATGCCTAATATTCCTGAGTTTTACCATAAGGTTCCAGAGCTTAGTGCAGAAGGTGGGTCCTATGGGGGAAATTTTGTTGAGTATGATGGGAGGAAGAAGAAGGAGAAGACGGTGTCGGCGCAGAGCATGGCGGCGAGGGAGAGGAGGAGGAAGATCACAGAGAAGACACAAGAGCTAGGGAGGCTAGTTCCTGGTGGCACCAAGATGAACACAGCTGAGATGCTTCGTGGTGCTGCTAAGTATGTCACTTACTTAAAAGCCCAAGTTGGGATGCTTCAACTCATGAACACACTCCAGGAAGATAAGGTATTCACTCCCACTGAAGAAATGCAGAAGCTGCTTACCTCTCCTGCTGTTGAAGAGAAGATGTACATGGAAGAGAAGTGCTTTGTTCCACAAGAATTTGTCACCACTTTGACAAATCATAAACACGTCCAATCAAGACCTTCCATCCTTAAAGATCTTAATCAGATGATTGGAACAGACATTGAGATGAAAGAACAGAAACCGTAG 1152 0.4358 MKMRSSAMLMLLMVWLTAARTNESVSAQRKINIDSMSDDSDNYWKVESSMLGGKKTGEKIEYDWECITKSVAQCAEHVHVRFVLTQMALTSYFNFENTLQADLNLEASIFHEATPEEEVQVAADYNHHLLLPYFHNSHENYSFFDPNTFFLEPSSTANSFLYPHELLPYDPLMYEEHYSNLLPCPKRQKYFSYDQSLTDLITPTNNCFDGNVVMPNIPEFYHKVPELSAEGGSYGGNFVEYDGRKKKEKTVSAQSMAARERRRKITEKTQELGRLVPGGTKMNTAEMLRGAAKYVTYLKAQVGMLQLMNTLQEDKVFTPTEEMQKLLTSPAVEEKMYMEEKCFVPQEFVTTLTNHKHVQSRPSILKDLNQMIGTDIEMKEQKP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2142 383 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 252 350 IPR045843 GO:0003700|GO:0006355
Dere07g2142 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 310 IPR036638 GO:0046983
Dere07g2142 383 Gene3D - 245 318 IPR036638 GO:0046983
Dere07g2142 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 298 IPR011598 GO:0046983
Dere07g2142 383 Pfam Helix-loop-helix DNA-binding domain 254 298 IPR011598 GO:0046983
Dere07g2142 383 SMART finulus 255 304 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2142 Dere-ChrDere07 37584274 37591222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2142 216 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 44.848 7.02e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere07g2142 HLH 3.7e-06 No_clan