Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2059 ATGCCAGCATTGATCTCTGGGCGGTTGGTCCTGCTAGTTGGAGAGTCATTGCCCTTGCAAAGGTTCTTGCCCACTACTAGGACAGCTTGTTTGCATAGCAGTATCCGTTGTTTGAGTCGAATAGAGCCTCAACATGATCATCTTACTCCTTTAAGCCTAGGTTTCAATAGTGAAAATGAAACCAGGAAGAATAACAAAGTAAATAAACTGAAGCAATTGGGTTCCTCCTCTGTAGCCTCAAAGAGCAAAGCAAAGGCCATTGGTATCAGCGAAATTAAAGCAGTTGGGGCCACAAAGAAACAGCAGATGGAGTCTGCTCCATTTGCTGCTAAGTCCTTTTCGGAACTTGGCCTCCCTCATTTGTTGATTGAGAGATTAGAAAATGAAGGTTTTACAGTTCCAACTGAAGTGCAATCTGCAGCAATTCCTACAATTTTGAAAAATCATGATGTCATTATTCAATCTTATACAGGTTCAGGGAAAACATTAGCTTATCTCCTTCCCATATTATCTAATGTTGGCCCACTGAGGAATAAAACTTCTGAAGGTAACAATGATGGTGAACCTGGGAGGAAAATGGGAATAGAAGCTGTAGTTGTTGCTCCCTCTAGGGAGCTGGGCATGCAAATAGTGAGAGAGTTTGAGAAGATACTTGGACTTGCAAACAAGAAAGCGGTTCAACAGCTTGTGGGAGGTGCAAACCGATCTAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCAATTGTTGTTGGCACACCTGGTAGAATAGCAGAGCTCAGTGCGGCTGGGAAACTTCACACCCATGGCTGCCGTTATTTGGTCCTAGACGAAGTTGATGAACTCCTGTCATTTAACTTCCGGGAGGACATGCACCGGATACTAGAACATGTGGGAAGGAGATCAGGTGCTGACCCACGTGTGCAAAATGGCTCAGTTCCTAGACGAGCAGAGCGTCAAACAATTATGGTGTCTGCAACTGTTCCATTTTCTGTTGTTAGGGCTGCCCGGAGCTGGGGGCGTGATCCACTTCTTGTGCAAGCCAATAAAGTTGGCCTGCTTGAAACCATTTTTCCTTCTAAACCTGTCAATTTGTCAGGATCTACACCTAGTTCAAATCCTAACTCTACAATGCTAACGCAGGCAGCAGTAGAGAGTCTGCCTCCTGCATTAAAGCATTATTATTGTGTCACAAAGTTACAGCATAAAGTTGATACCTTGAGAAGGTCTATTCATGCACTAGATGCCAAATTTGTCATTGTTTTCATGAACCATATTAGGCAACTTAAGGATGTTGTCTTCAAGCTAGAGGCCCGTGGGATGAGCGCTGCTGAGTTACATGGGGATCTGGGGAAACTTGCTAGGTCAACAACTCTGAAAAAGTTCAAGAACGGTGAGGTGAGAGTGCTGGTGACAAATGAATTATCAGCACGGGGATTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCCACAGACTCAATTCATTATGCACACCGAGCTGGCAGGACAGGTCGGCTTGGGAGGACTGGTACAGTGCTTTCAATATGTGAAGAACCAGAAGTGTTTGTTGTGAAGAAACTGCAAAAGCAGCTTGGGATACCAATAGTGTGTTGTGAGTTTGCGGAGGGAAAGCTGCATGTTAATGAAGAGAAAATTCTAAATACTGTGAGATGA 1686 0.4419 MPALISGRLVLLVGESLPLQRFLPTTRTACLHSSIRCLSRIEPQHDHLTPLSLGFNSENETRKNNKVNKLKQLGSSSVASKSKAKAIGISEIKAVGATKKQQMESAPFAAKSFSELGLPHLLIERLENEGFTVPTEVQSAAIPTILKNHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTSEGNNDGEPGRKMGIEAVVVAPSRELGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPRVQNGSVPRRAERQTIMVSATVPFSVVRAARSWGRDPLLVQANKVGLLETIFPSKPVNLSGSTPSSNPNSTMLTQAAVESLPPALKHYYCVTKLQHKVDTLRRSIHALDAKFVIVFMNHIRQLKDVVFKLEARGMSAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRTGTVLSICEEPEVFVVKKLQKQLGIPIVCCEFAEGKLHVNEEKILNTVR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2059 561 Gene3D - 391 561 IPR027417 -
Dere07g2059 561 CDD SF2_C_DEAD 391 520 - -
Dere07g2059 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Dere07g2059 561 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 38 554 - -
Dere07g2059 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 550 IPR001650 -
Dere07g2059 561 SMART ultradead3 130 357 IPR014001 -
Dere07g2059 561 SMART helicmild6 430 511 IPR001650 -
Dere07g2059 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 531 IPR027417 -
Dere07g2059 561 CDD DEADc 122 347 - -
Dere07g2059 561 Pfam Helicase conserved C-terminal domain 412 511 IPR001650 -
Dere07g2059 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Dere07g2059 561 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Dere07g2059 561 Coils Coil 397 417 - -
Dere07g2059 561 Gene3D - 71 349 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2059 Dere-ChrDere07 34245409 34247094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2059 111 543 Eukaryotic Initiation Factors Gene Family AT3G13920 27.626 4.04e-43 157