Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2049 ATGGCAAATCAACTCTATCTCTACGGCTATAGCCCTACATACGGTGGAGCTTCACCGCCTTCCCCTGCCGCCGCCGCCGCCACCGCAGCTGCCACTGCAACTACCCTTTCCTCCGGCCGATACCTTTCTTCCGATATGTATTACCCCCAACGCAAAGATTCCTCTCTTCGATACTCCTCTTACGCAGCTTCCGATATCGACATTGGCCCACCTGGTGTTGCCACCAGAATCTCCGGCGCCGCCGTCGGACCGGCATCTTCCACCACTACTCAGTTGCTTTCTCAAGGTTCTTGGCCTGCTGCTATTGCTGCAGCTGCCGCTGCTGCAAATGTTGGGTCGGCTGCACTCGACCCGATTGTTAGCAACGTTAAACGTTCTTCTGATGCGCTCTACCATCCAACTGTTTTGCATTCCCATAACACAATTGGGCAAAGTGAAGCATGGTATTCTACAAATTCATTAACAAAGCGCCCTAGGTACGAGAGTGCAAGCAATTTGCCTATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACCAGAACCTGTAAATTTGGAGATAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATGTTGTTACGAATGAGACTCTTCCTGAGAGACCAGGAGAACCAGATTGTCCATACTTTCTAAAAACTCAGAGATGCAAGTTTGGTTCAAGGTGCAAGTTTAATCATCCCAAGGATTTATTTGAAAATGCTGATGTTTCTGCCTTACCAGAGAGGCCTTCTGAGCCCCCTTGTTCGTTCTACATGAAAACGGGAAGATGTAAATTTGGTGTTACCTGTAAATTTCATCACCCAAAAGATATCCAGATTCAGCTGTCTGAAGAACAGACTGGTGTTGTTGGGCAGACCCAATTAGCCACTAAGACAGAGGGGGATCCTTATATTTCTTACGCTTCTCCACTATCACATAATAGCAAAGGGCTTCCTATAAGACTGGGTGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTATGGTGCTACGTGCCGCTACAATCATCCTGACTGGAGTGTAATTAATCCGACCGCAGCTGGGTTAGGCCATTCTGTTTTAACACCATCAGCAGCTAATCTGAACCTGGGAATTGTTGATCCAGCTGCATCACTTTATCAAGCCATTGACCCCAGATTGACGTCCCAGGTGGGAATAGGACAAACTGTCTATCCTCAACGACCAGGGCAAATTGAATGTGATTACTATATGAAGACGGGAGAGTGTAAATTTGGGGAAAGATGCAAGTTCCATCACCCAATTGACCGCTCAGCACCATCACTGTCAAATTCAGCTGCACAACAAACTGTTAAACTCACTCTTGCAGGGTTACCTAGGAGAGAGGGTGTTGTGATCTGTCCTTATTATTTGAAAACTGGCACTTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCTCCTGGAGAAGTTATGGAGATGGCAAAGTCTCAAGGAACATCTGCAACCAACGGAGGAGGAGGGGAAGCAGAAGCCAATGAAAAAGAGACCGATTCTGTTCAGGAAAAGCAATGA 1614 0.4709 MANQLYLYGYSPTYGGASPPSPAAAAATAAATATTLSSGRYLSSDMYYPQRKDSSLRYSSYAASDIDIGPPGVATRISGAAVGPASSTTTQLLSQGSWPAAIAAAAAAANVGSAALDPIVSNVKRSSDALYHPTVLHSHNTIGQSEAWYSTNSLTKRPRYESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPNVVTNETLPERPGEPDCPYFLKTQRCKFGSRCKFNHPKDLFENADVSALPERPSEPPCSFYMKTGRCKFGVTCKFHHPKDIQIQLSEEQTGVVGQTQLATKTEGDPYISYASPLSHNSKGLPIRLGEVDCPFYMKTGSCKYGATCRYNHPDWSVINPTAAGLGHSVLTPSAANLNLGIVDPAASLYQAIDPRLTSQVGIGQTVYPQRPGQIECDYYMKTGECKFGERCKFHHPIDRSAPSLSNSAAQQTVKLTLAGLPRREGVVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSATNGGGGEAEANEKETDSVQEKQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2049 537 ProSiteProfiles Zinc finger C3H1-type profile. 265 293 IPR000571 GO:0046872
Dere07g2049 537 SUPERFAMILY CCCH zinc finger 229 252 IPR036855 GO:0046872
Dere07g2049 537 SUPERFAMILY CCCH zinc finger 422 448 IPR036855 GO:0046872
Dere07g2049 537 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Dere07g2049 537 ProSiteProfiles Zinc finger C3H1-type profile. 420 448 IPR000571 GO:0046872
Dere07g2049 537 FunFam Zinc finger CCCH domain-containing protein 37 128 209 - -
Dere07g2049 537 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Dere07g2049 537 SUPERFAMILY CCCH zinc finger 173 199 IPR036855 GO:0046872
Dere07g2049 537 SUPERFAMILY CCCH zinc finger 341 364 IPR036855 GO:0046872
Dere07g2049 537 SMART c3hfinal6 172 199 IPR000571 GO:0046872
Dere07g2049 537 SMART c3hfinal6 265 292 IPR000571 GO:0046872
Dere07g2049 537 SMART c3hfinal6 473 500 IPR000571 GO:0046872
Dere07g2049 537 SMART c3hfinal6 420 447 IPR000571 GO:0046872
Dere07g2049 537 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Dere07g2049 537 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Dere07g2049 537 MobiDBLite consensus disorder prediction 505 537 - -
Dere07g2049 537 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Dere07g2049 537 PANTHER PROTEIN PHOSPHATASE RELATED 324 376 - -
Dere07g2049 537 FunFam Zinc finger CCCH domain-containing protein 37 210 257 - -
Dere07g2049 537 SUPERFAMILY CCCH zinc finger 476 500 IPR036855 GO:0046872
Dere07g2049 537 Gene3D - 223 304 - -
Dere07g2049 537 Gene3D - 418 515 - -
Dere07g2049 537 SUPERFAMILY CCCH zinc finger 269 293 IPR036855 GO:0046872
Dere07g2049 537 FunFam zinc finger CCCH domain-containing protein 37 418 514 - -
Dere07g2049 537 Gene3D - 328 371 - -
Dere07g2049 537 Gene3D - 131 211 - -
Dere07g2049 537 ProSiteProfiles Zinc finger C3H1-type profile. 473 501 IPR000571 GO:0046872
Dere07g2049 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 251 IPR000571 GO:0046872
Dere07g2049 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 423 446 IPR000571 GO:0046872
Dere07g2049 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 174 198 IPR000571 GO:0046872
Dere07g2049 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 292 IPR000571 GO:0046872
Dere07g2049 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 475 500 IPR000571 GO:0046872
Dere07g2049 537 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 340 363 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2049 Dere-ChrDere07 34155680 34172058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2049 335 512 C2H2 Transcription Factor Family AT3G02830 37.430 1.59e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere07g2049 zf-CCCH 7.1e-11 CL0537