Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g2012 ATGGAAGAGCCTCGTGAAGAAGCTTTCAACCATCTGGGACTAGGCCTCAACACTACGTTATCGATCGGTCCATCTAGCAGTAGCAAAAGCTGTGATCATCGTCATCAACAAGGAGAAGAAACAGAAGAAGAAGAAGAAGCCAAGAAGGAGAAGGAAAATCACAGTACTGTTAAAGATGATGAAGCTGCAAATAAATTTCCTACTGCTTCTCTTTCCTCTCCTAAAGCCAATAATAACAACCCCTTACAGCTCGATCTTCTTCCTCACACTCCAGTCGTACCTCTCTCGTCCTTCTCATGGCCTCCTCCTTCTGAAAATGGTGATGACGTGGCGGCTTCTTGTCGTAGCTTGAACGTGAAAAGTTTGCCGGAGGAGGATGAGTCGGAGGAGAGGGCGGCGCTGCTATCGTCTCCAAACAGCGGAGCGACATCGTTTCAGATGGATTTGAGTATATACAGCAGAAGAGGAAGCAGTATGAGTGGATCAGGATACAATAACAATGAAAGGAGAGACTCAGAAGGTGAAAGGACATGTTCGAGAGCAAGCGATGAAGATGACAACGTTGGAGGTGGTACCAGAAAGAAACTCAGGCTGTCTAAAGAACAATCTGCTTTCCTTGAAGAAAGCTTCAAAGAACACAGTACTCTTAATCCTAAACAAAAGCTCGCTCTTGCAAAACAACTCCATCTTCGTCCTCGCCAAGTCGAAGTCTGGTTTCAAAACAGAAGAGCAAGGACGAAGCTGAAGCAGACAGAGGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGACACTATCAGAAGAGAACAGGAGGCTTCAGAAGGAGCTTCAAGAACTGAGGGCTTTGAAGGCTTCGAACTCAAATCCATTCTTCATGCAATTACCAGCCACAACCTTGACCATGTGCCCTTCCTGTGAGCGCGTCGCACCCAATCCCTTCTCCACTTCTTCTTCTTCAGCTCCTTCTGCTACTACTACTTCCAAACCCACTGGGTTCTCTCTTGGCAAACCCAAGTTCTATCCATTCCCTCACTCCAAGCCACACAGGTCATAG 1053 0.4663 MEEPREEAFNHLGLGLNTTLSIGPSSSSKSCDHRHQQGEETEEEEEAKKEKENHSTVKDDEAANKFPTASLSSPKANNNNPLQLDLLPHTPVVPLSSFSWPPPSENGDDVAASCRSLNVKSLPEEDESEERAALLSSPNSGATSFQMDLSIYSRRGSSMSGSGYNNNERRDSEGERTCSRASDEDDNVGGGTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLHLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLSEENRRLQKELQELRALKASNSNPFFMQLPATTLTMCPSCERVAPNPFSTSSSSAPSATTTSKPTGFSLGKPKFYPFPHSKPHRS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g2012 350 MobiDBLite consensus disorder prediction 14 31 - -
Dere07g2012 350 Pfam Homeobox associated leucine zipper 249 283 IPR003106 GO:0006355|GO:0043565
Dere07g2012 350 MobiDBLite consensus disorder prediction 168 196 - -
Dere07g2012 350 CDD bZIP 242 281 - -
Dere07g2012 350 SMART halz 249 294 IPR003106 GO:0006355|GO:0043565
Dere07g2012 350 CDD homeodomain 193 250 IPR001356 GO:0003677
Dere07g2012 350 ProSiteProfiles 'Homeobox' domain profile. 189 249 IPR001356 GO:0003677
Dere07g2012 350 MobiDBLite consensus disorder prediction 66 85 - -
Dere07g2012 350 Coils Coil 255 285 - -
Dere07g2012 350 MobiDBLite consensus disorder prediction 156 196 - -
Dere07g2012 350 Pfam Homeodomain 193 247 IPR001356 GO:0003677
Dere07g2012 350 MobiDBLite consensus disorder prediction 312 350 - -
Dere07g2012 350 MobiDBLite consensus disorder prediction 32 61 - -
Dere07g2012 350 MobiDBLite consensus disorder prediction 1 144 - -
Dere07g2012 350 Gene3D - 197 247 - -
Dere07g2012 350 SMART HOX_1 191 253 IPR001356 GO:0003677
Dere07g2012 350 ProSitePatterns 'Homeobox' domain signature. 224 247 IPR017970 GO:0000981|GO:0006355
Dere07g2012 350 MobiDBLite consensus disorder prediction 312 332 - -
Dere07g2012 350 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 42 329 - -
Dere07g2012 350 SUPERFAMILY Homeodomain-like 183 250 IPR009057 -
Dere07g2012 350 FunFam Homeobox-leucine zipper protein 18 177 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g2012 Dere-ChrDere07 33458177 33460363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g2012 177 342 Homeobox Transcription Factor Family AT4G37790 64.497 3.57e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere07g2012 Homeodomain 1.7e-15 CL0123