Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1996 ATGAGACTGATCATTTGGCTCTGCTCAAATTCAAGGAATCAATATCCAGTGACCCAAATAGCATCTTGGCCTCTTGGAATGATTCCACCCACTTTTGCAACTGGCATGGAATCACTTGCAGCAAACGGCACCAGTAAGAATAAACTGTTTGGTACAATTCCTTCTTCTCTTTGCAATTTGTCATCACTCACCGACATTCAAGTTGCCTTTAATCAATTTAGTGGCTCTCTTCCTCCCAACATATTCCTCACCCTTCCTAATCTTGAGGTGTTGCTAATTGGTGGAAATCAAATCTCAGGTCCTTTCCTAATTTCCTTTGCAAATGCGTCTGTGCTTCAAACTCTTGACGCATCTGATAACCATTTTGTCGGGCAATTTCAAATTCAGGGAAAGCTTCAAAATCTTATGAAGTTAAGTTTATGGCAATCAAATCTAGGTACTAATTCGAGTGGGGATTTAGATTTTCTAAATTCTTTGACTAACTGTAGTAAGTTGGATGTTATGGATATAGGTTATAATAATTTTGGAGGTCATTTGCCTGATTCCATAGGCAACTTGTCTACCCAAATTACTCAGTTATATCTCGGAGGCAACCAAATCTTTGGAAAAATTCCTACATCAATAGGAAATCTCATTAACTTGATTGCATTGGGCATGCAAGAGAACCATTTTACAGGGACCATTCCGTCTACTTTTTGGAAGTTTCAAAAGCTGCAAGAATTAGGTTTGGCGATAAACAAACTTTCAGGACAAATTCCTGCATACCTAGGGAACTTTAGTCAGTTGTATTGTCTGGACCTTGCAATAAATCTATTGGATGGAGAAATTCCCCCAAGTATTGGGAATCTCAAAATTTTAAATATTCTGGACCTTTCAGCAAACAACCTTAGCAGAGCAATACCCTCGCAAGTTTTTAGCCTTTCCTCTTTAGCATACCTAAATTTATCACAAAACTCATTGAGTGGCACGCTTCCTATTGAGGTTGGCAAGCTGGAAAATATCAATACATTCGATGTTTCAAAAAATTATCTTTCTGGGAACATTCCTAAAACAATTGGAGAATGCAAGGACATAGAGTACCTTAGTTTGAAAGGAAATTCCTTCCTTGACATCGTCCCTTCATCTTTGGCTTTGCTAAAAGGCCTTCAATATTTAGATTTGTCAAGAAACAACTTGTCTGGTTCAATTCCAGAGGGATTGCAAAGTATTTCTGCTTTAGAATACTTGAATGCTTCTTACAACATGTTGGATGGCATGGTACCAAGCAAAGTTGTCTTTAGCAATGCAAGTGCAATATCAGTGATCGGCAATAGTAAACTTTGTGGAGGTATTTCTCAGTTACAGCTACCACCATGCCCTAATAAGGTTACAAAATGGAGGAAACACCATAATTTCAAGTTGGTAGTAGTAATAAGTTGCATCACTGGTTTTCTTCTTCTGCTGTCATCTATTCTTACTATTTACTGGATGGCGAGAAGAAACAAGAGATCTTTATTGAATTCACCAACTATTGACCAGCTTTCTAAACTGTCATACCAAAGTTTGCACAATGCAACTGATGGTTTCTCAAATAACAACTTGATAGGAGCTGGAAGTTTTGGCTCTGTGTATAAAGGAAACCTTGAATCTGAAGTAGTTGCTATAAAGCCAAGCAATGTCCTTCTTGACGGGGACATGGTTACGCATATTGCTGATTTTGGGTTAGCTAGATTGCTCTCAAATATTAATAGCTTCTCTCGTAAGCAAAGCAGCACCATTGGATTAATAGGCACTATAGGCTATGCTCCTCCAGAATATGCAATGGGTTTTGACGTATCAGCTGAAGGTGATGTGTATAGCTTTGGGATTCTTGTGTTAGAACTGTTAACAGGACAAAGACCCACAGAGGAAATGTTTAAAGATGGCCATACTCTCCACAACTACGTAAAAATGTTATTTCCTGACAAGCTTTTGCAGATAGTAGATCAAGCTATTCTCCCTAGACAATTAAAACAATTAGTGACAACGTCAAGTGGCCAACAGGAGAACATGACATCGATCCATCCTAATGCAGAGAAATGCTTAATTTCACTATTTAAGATTGGACTTGCTTGTTCAGTGGACCCACCTAAAGAAAGAATGACTATGGTGGATGTTACCAGAGAACTAAATTTAATTAGAACTGCTTTTCTTTCTAGTGGGATCAACCAAAATTAA 2196 0.3807 MRLIIWLCSNSRNQYPVTQIASWPLGMIPPTFATGMESLAANGTSKNKLFGTIPSSLCNLSSLTDIQVAFNQFSGSLPPNIFLTLPNLEVLLIGGNQISGPFLISFANASVLQTLDASDNHFVGQFQIQGKLQNLMKLSLWQSNLGTNSSGDLDFLNSLTNCSKLDVMDIGYNNFGGHLPDSIGNLSTQITQLYLGGNQIFGKIPTSIGNLINLIALGMQENHFTGTIPSTFWKFQKLQELGLAINKLSGQIPAYLGNFSQLYCLDLAINLLDGEIPPSIGNLKILNILDLSANNLSRAIPSQVFSLSSLAYLNLSQNSLSGTLPIEVGKLENINTFDVSKNYLSGNIPKTIGECKDIEYLSLKGNSFLDIVPSSLALLKGLQYLDLSRNNLSGSIPEGLQSISALEYLNASYNMLDGMVPSKVVFSNASAISVIGNSKLCGGISQLQLPPCPNKVTKWRKHHNFKLVVVISCITGFLLLLSSILTIYWMARRNKRSLLNSPTIDQLSKLSYQSLHNATDGFSNNNLIGAGSFGSVYKGNLESEVVAIKPSNVLLDGDMVTHIADFGLARLLSNINSFSRKQSSTIGLIGTIGYAPPEYAMGFDVSAEGDVYSFGILVLELLTGQRPTEEMFKDGHTLHNYVKMLFPDKLLQIVDQAILPRQLKQLVTTSSGQQENMTSIHPNAEKCLISLFKIGLACSVDPPKERMTMVDVTRELNLIRTAFLSSGINQN 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1996 731 ProSitePatterns Protein kinases ATP-binding region signature. 528 549 IPR017441 GO:0005524
Dere07g1996 731 Gene3D Ribonuclease Inhibitor 151 455 IPR032675 -
Dere07g1996 731 ProSiteProfiles Protein kinase domain profile. 382 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1996 731 Pfam Protein kinase domain 548 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1996 731 PANTHER OS04G0122200 PROTEIN 548 723 - -
Dere07g1996 731 FunFam LRR receptor-like serine/threonine-protein kinase EFR 151 458 - -
Dere07g1996 731 SMART serkin_6 522 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1996 731 PRINTS Leucine-rich repeat signature 310 323 - -
Dere07g1996 731 PRINTS Leucine-rich repeat signature 379 392 - -
Dere07g1996 731 Gene3D Ribonuclease Inhibitor 21 150 IPR032675 -
Dere07g1996 731 Gene3D Transferase(Phosphotransferase) domain 1 546 726 - -
Dere07g1996 731 SMART LRR_typ_2 60 84 IPR003591 -
Dere07g1996 731 SMART LRR_typ_2 379 402 IPR003591 -
Dere07g1996 731 SMART LRR_typ_2 283 307 IPR003591 -
Dere07g1996 731 SUPERFAMILY Protein kinase-like (PK-like) 508 721 IPR011009 -
Dere07g1996 731 Pfam Leucine rich repeat 359 416 IPR001611 GO:0005515
Dere07g1996 731 SUPERFAMILY RNI-like 45 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1996 Dere-ChrDere07 33135846 33138498 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1996 548 726 Receptor kinase-like Gene Family AT3G47570 42.778 3.12e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere07g1996 Pkinase 3.3e-14 CL0016