Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1978 ATGAGCGTTCTGTATAGTCCCAGTACTGTAAAATACTCAGAAGCAGAGCTTAGGAGAAACCCGGAGATGGATTCAATTCACCACCTGAATTCTGGATTACAGAGGTACCGTTCTGCTCCAAGCTCCCTTCTGGCAAGCCTTGTTCAGAACAGCCATGGCTGTGTGAATGAGGAAGCTTCTAGAAACATGGATCATCATCATTATCATCCATCTTCAAGTTCAGAAATGGAAGCCATGTTGGCCAAGTTGGTTTCTTCATCTAACAATGGATGGATCAAAGAGGAAGAAGCAGGGGACTCTGTTTCAGAGGGACACAGTGGGTATAATTCTAGTTATGGTTCACAGATAATTTACCAATCCCAGGCTCAGCAAGTTCAAGGCTTTCAAAATGGGTGTTTGGGATCTTCTTCTGGGAATGCTTTTGATGGGTCATTCAATTCCACTGAGTCCAAAATGAGGTCTAATAATCTCATTAGGCAGAAGAGCTCCCCTGCAGGACTGTTCAACAATTTCTCAGTTCAAAATGGTTTTGGAGGATGGAGAGATGTCTGTGATGTCTCAAATGGACAAGCTTCTACATCAACTAGTGGGTTCAATGGCACTACTCTAGGCTTCTCTTCTAGGTCATCCTCATGTTCTAGACAATTGCCTCATATTGTTGAAGATGGGAATGAAACCCTAGAAGAAGCAGCTTGTGTCGAAACTGCAGATCTGAGAAATCACAGAGGCAGCAACACTAAGTGTTATGTACCTGATTTCTGGGATGCTTCTTCATTCAATAACCCTAAAACAGCTAGTGACAATGATGAAATCATGTTTTCTACCTCAGATGCTTTTGAAACTCAGAACACAGATTTTGGATATGAAAATCATGGTTTGACTTGTCATCTAAGTCTGCCTAGTTCTTCTTCTTCAAAGATGAATGCCATGGAGAAGTTTCTGCAAATTCAAGGCTCTGTTCCTTGTAAGATTAGAGCCAAAAGAGGCTTTGCCACTCACCCAAGGAGCATTGCAGAGAGGGTAAGAAGAACAAGAATTAGTGAAAGAATAAAGAAATTACAAGATCTCTTTCCAAAATCAGACAAGCAAACGTGCACAGCAGATATGTTGGATTTGGCAGCTCACTATATTACAGACTTGCAGAAACAAGTTAAGACGCTCACTGATACTAAGGCAATGTGCAAGTGTTCAAATACTCTGAAGCAAAACTTATGA 1215 0.4132 MSVLYSPSTVKYSEAELRRNPEMDSIHHLNSGLQRYRSAPSSLLASLVQNSHGCVNEEASRNMDHHHYHPSSSSEMEAMLAKLVSSSNNGWIKEEEAGDSVSEGHSGYNSSYGSQIIYQSQAQQVQGFQNGCLGSSSGNAFDGSFNSTESKMRSNNLIRQKSSPAGLFNNFSVQNGFGGWRDVCDVSNGQASTSTSGFNGTTLGFSSRSSSCSRQLPHIVEDGNETLEEAACVETADLRNHRGSNTKCYVPDFWDASSFNNPKTASDNDEIMFSTSDAFETQNTDFGYENHGLTCHLSLPSSSSSKMNAMEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSDKQTCTADMLDLAAHYITDLQKQVKTLTDTKAMCKCSNTLKQNL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1978 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 380 IPR011598 GO:0046983
Dere07g1978 404 FunFam Transcription factor bHLH130 family 331 400 - -
Dere07g1978 404 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 395 - -
Dere07g1978 404 SMART finulus 336 386 IPR011598 GO:0046983
Dere07g1978 404 Gene3D - 332 403 IPR036638 GO:0046983
Dere07g1978 404 Pfam Helix-loop-helix DNA-binding domain 336 381 IPR011598 GO:0046983
Dere07g1978 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 396 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1978 Dere-ChrDere07 32950167 32953025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1978 23 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.714 1.31e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere07g1978 HLH 1.2e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1978 07 32950167 32953025 Dere07g1978 07 32950167 32953025 ECH