Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1962 ATGCTTGTATTTGTATCTCCTCACCGGTTTTCTAATTTGTCAAATTCCACCGATCGCCCCATGTCTAAGAGGAATTGCAAGTTCTTTGCCCGTGGAGCATGTCTCAAAGGGGAGCAATGTGAATACGCTCATGAAAGAAGTGATCCTTCAGTTTGCAAATTCTATCAGAAAGGGCTCTGTGCTTATGGTAGCCGGTGCAAATATAAACATGTTAAAGCTTCTCAAGCACAATCATCAGAAAATAGACAGCAATCCCTGGATTCTGATTCTGTTGTAGCTCAAACTACAAGAGGAACACCAAGATGGGTTCCAAAGTTGTCTCCTTCTGACAGACATGAAAATAGTCTAAAATGTAAGCATCATTATTTCCAAAGGAATGGTGATGCCAGTGGATCCAGTACTGCTTTACCATCTGAGCATTTCTTTTGTGCGTTTTCTGCTTCCAACTGTCCCTTAGGAGAAAAGTGTTCTCGTGTTCATGGAGACCAATGTGCATACTGTAAAAAGTTCTGCTTGCATCCTACTGAACCAAAGGAAAGAGAGGAGCATTTGCACAATTGTGAGAGAAAGGGAGAATACGTTCAGAATTTGAATGACAGTCAAGAAATAGAATGCAACATTTGCTTGGAGCATGTTCTTTCAAAGCCTAAAGCAGCTAAATTCGGAGTGCTTCCTGAATGTGACCATGCTTTCTGTTTATCCTGTATCAGGAATTGGCGTAATAGTGCCCCAACCTCGATGACAAATGTCACTAACGTGAGGACCTGTCCAGTTTGCCGCAAGCTGTCGTATTATGTTATTCCAAGTGCTATTTGGTATTCTACAAAGGAAGAGAAACAGGGAATTATTGACAACTACAAGGCAAAGTGCAAGTTGATTGATTGCAAGCATTTTGACTTTGGAAATGGGAACTGTCCATTTGGGACTGATTGTTTCTACAAGCATACTGTGAAGCCTGGTTCATACAGATGGATACATCACAGACCACCACCTCCACCTCCACGCAGACCAAATAATATGAATGTGCTCAACCAATTTGATTTTGGAGAATTTGATCCTATCAGTCTAGATTTAGAGTTTTTAAATGATATGGATCCATTTGAGATGATGCCTTTATCAGAGAGGCTGGTTGGTTCAGATCAGTCTGATGCCGAAGTTTCAGTTGAAGAAATAGATCCTTTTCACTTGGCTGTAGAGGGTGCCCTGGATTCTGGTTCAGACCTCATTGTTTCCGAAGAATTGGATATGCCTTTCATAGAGAGGCTGCGTGGTTTAGGGTGGTCTGGTCCTGAAGATTTTGATGATGAAGAAATGGGTATTACGTTTTCATCAGAGAGGTTGCACGGTTCAGGGTGGTCTGGTCCCGAAGATTTTGATGAAGAAATGGCTACAGGGTGGTCTGGTTCCGAAGATTTTGATGTTGAAGAAATGGGTATTATGCCTTCATCAGAGAGGCTGGGTGGTTTAGGGTGGTCTGATCCCGAAGATTTTGTTGATGAAGAAATGGATGTGTTTAACGCAGATGGTATTTTAGAGGCGCTGGATGCTGGTTTAAACGCCTTCTTTTCTGGAGAATCATACAACGAAGAATGGAATCCCGTGGAGCCATCATGGTTATCTATGATTGACCATTCTAGTTTGGAAGAAGATTCCAGTTCCAGTGAGGAAGACTATTAG 1677 0.4198 MLVFVSPHRFSNLSNSTDRPMSKRNCKFFARGACLKGEQCEYAHERSDPSVCKFYQKGLCAYGSRCKYKHVKASQAQSSENRQQSLDSDSVVAQTTRGTPRWVPKLSPSDRHENSLKCKHHYFQRNGDASGSSTALPSEHFFCAFSASNCPLGEKCSRVHGDQCAYCKKFCLHPTEPKEREEHLHNCERKGEYVQNLNDSQEIECNICLEHVLSKPKAAKFGVLPECDHAFCLSCIRNWRNSAPTSMTNVTNVRTCPVCRKLSYYVIPSAIWYSTKEEKQGIIDNYKAKCKLIDCKHFDFGNGNCPFGTDCFYKHTVKPGSYRWIHHRPPPPPPRRPNNMNVLNQFDFGEFDPISLDLEFLNDMDPFEMMPLSERLVGSDQSDAEVSVEEIDPFHLAVEGALDSGSDLIVSEELDMPFIERLRGLGWSGPEDFDDEEMGITFSSERLHGSGWSGPEDFDEEMATGWSGSEDFDVEEMGIMPSSERLGGLGWSDPEDFVDEEMDVFNADGILEALDAGLNAFFSGESYNEEWNPVEPSWLSMIDHSSLEEDSSSSEEDY 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1962 558 ProSiteProfiles Zinc finger C3H1-type profile. 46 73 IPR000571 GO:0046872
Dere07g1962 558 MobiDBLite consensus disorder prediction 77 113 - -
Dere07g1962 558 Pfam RNA-binding, Nab2-type zinc finger 143 161 - -
Dere07g1962 558 Pfam RNA-binding, Nab2-type zinc finger 294 315 - -
Dere07g1962 558 Pfam RNA-binding, Nab2-type zinc finger 26 44 - -
Dere07g1962 558 Gene3D - 49 127 - -
Dere07g1962 558 SUPERFAMILY CCCH zinc finger 20 45 IPR036855 GO:0046872
Dere07g1962 558 ProSiteProfiles Zinc finger RING-type profile. 205 260 IPR001841 -
Dere07g1962 558 PANTHER MAKORIN-RELATED 21 354 IPR045072 GO:0000209|GO:0061630
Dere07g1962 558 SUPERFAMILY CCCH zinc finger 50 70 IPR036855 GO:0046872
Dere07g1962 558 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
Dere07g1962 558 SUPERFAMILY RING/U-box 195 266 - -
Dere07g1962 558 ProSiteProfiles Zinc finger C3H1-type profile. 20 45 IPR000571 GO:0046872
Dere07g1962 558 ProSiteProfiles Zinc finger C3H1-type profile. 289 318 IPR000571 GO:0046872
Dere07g1962 558 Pfam CCCH-type zinc finger 51 70 IPR041367 -
Dere07g1962 558 SMART c3hfinal6 138 162 IPR000571 GO:0046872
Dere07g1962 558 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Dere07g1962 558 SMART c3hfinal6 289 317 IPR000571 GO:0046872
Dere07g1962 558 SMART c3hfinal6 48 72 IPR000571 GO:0046872
Dere07g1962 558 MobiDBLite consensus disorder prediction 77 102 - -
Dere07g1962 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 272 IPR013083 -
Dere07g1962 558 SMART ring_2 205 259 IPR001841 -
Dere07g1962 558 Pfam Zinc finger, C3HC4 type (RING finger) 205 259 IPR018957 GO:0046872
Dere07g1962 558 CDD RING-HC_MKRN 203 260 - -
Dere07g1962 558 Gene3D - 16 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1962 Dere-ChrDere07 32767341 32771005 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere07g1962 zf-C3HC4 2.6e-07 CL0229