LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g1955	ATGACAGATCCTCAATCATGGTTCAATTTCATCCCCCTTCTTCACCCTCCTCACTACTCTAATTCCTTCACTACTTCTCAATCCAACTTCAGTAATTTCTTATACCCTCTTCATGCTCAGTTCTCTAATCCCAACACATCATTTCCCATTCAATTCCAAACATCCTCTAATTCCTCCACTTTAGGCCCTCCTCCTGATTCCCCTCCTCTGAAGGTAGCCCTCCCTCTCATAAATAACCTAAGCCTCGCAACAAATATTGAACCCTCAAGAAGAGGAGTGGAAGAGGAAGAGGAAGAAAAGAGCAAGAAAATGGACAAAGAGGAAGAAGTAGTAGTAGAAGAAGAAGACGATGATGATAGAACTACTGTGACTGTAGCCCTAGGAATAGGGCCTCCTACTAGTACGAGCACTTCTTCTTCTTCTCAAATGGGGTCAAGCAATCAGATCTCAAATTCTGTGGAAATGGCTGAAAAAATGGAACTTGGTGTGGTTTCTGGCTACCCTTTGGAAAGATTAAAAAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTGTATGCTTCAAGACTTTCAATAGATACAACAATCTTCAGATGCATATGTGGGGTCATGGATCTCAGTACAGAAAAGGGCCTGATTCTCTAAGAGGAACACAACCCACCGCCATGCTAAGGCTTCCATGCTTCTGTTGTGCACCAGGTTGCAAGCACAACATAGACCACCCAAGAACAAGGCCTCTCAAGGACTTTAGAACCCTACAAACACACTACAAGAGGAAGCATGGCATCAAACCCTACATGTGCAGAAAGTGTGGGAAAGCCTTCGCTGTGAAAGGTGACTGGAGGACTCACGAGAAGAACTGTGGCAAAATATGGTACTGCCTTTGTGGGTCTGATTTCAAACACAAAAGGTCTCTCAAAGACCATGTCAGAGCATTCGGCCATGGCCATGGAGCTTTTGGCACTGATAATTGTTGCTTGCAGGAAGAAGATGAAGCTGCCTCTGAGATTGAACAAGATGGGGAGAATTCCTCTGTGTGA	1071	0.4472	MTDPQSWFNFIPLLHPPHYSNSFTTSQSNFSNFLYPLHAQFSNPNTSFPIQFQTSSNSSTLGPPPDSPPLKVALPLINNLSLATNIEPSRRGVEEEEEEKSKKMDKEEEVVVEEEDDDDRTTVTVALGIGPPTSTSTSSSSQMGSSNQISNSVEMAEKMELGVVSGYPLERLKKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPGCKHNIDHPRTRPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVRAFGHGHGAFGTDNCCLQEEDEAASEIEQDGENSSV	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g1955	356	ProSiteProfiles	Zinc finger C2H2 type domain profile.	192	219	IPR013087	-
	Dere07g1955	356	SMART	c2h2final6	302	325	IPR013087	-
	Dere07g1955	356	SMART	c2h2final6	276	296	IPR013087	-
	Dere07g1955	356	SMART	c2h2final6	192	214	IPR013087	-
	Dere07g1955	356	SUPERFAMILY	beta-beta-alpha zinc fingers	188	214	IPR036236	-
	Dere07g1955	356	ProSiteProfiles	Zinc finger C2H2 type domain profile.	276	296	IPR013087	-
	Dere07g1955	356	MobiDBLite	consensus disorder prediction	127	147	-	-
	Dere07g1955	356	FunFam	Zinc finger protein WIP2	245	327	-	-
	Dere07g1955	356	Gene3D	Classic Zinc Finger	233	325	-	-
	Dere07g1955	356	FunFam	zinc finger protein WIP2-like	191	214	-	-
	Dere07g1955	356	MobiDBLite	consensus disorder prediction	89	109	-	-
	Dere07g1955	356	MobiDBLite	consensus disorder prediction	49	69	-	-
	Dere07g1955	356	SUPERFAMILY	beta-beta-alpha zinc fingers	259	296	IPR036236	-
	Dere07g1955	356	Gene3D	Classic Zinc Finger	191	214	-	-
	Dere07g1955	356	Coils	Coil	90	110	-	-
	Dere07g1955	356	PANTHER	ZINC FINGER PROTEIN WIP2	42	353	IPR043584	GO:0003700\|GO:0010468
	Dere07g1955	356	MobiDBLite	consensus disorder prediction	87	147	-	-
	Dere07g1955	356	ProSitePatterns	Zinc finger C2H2 type domain signature.	194	214	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g1955	Dere-ChrDere07	32732756	32736823	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g1955	161	349	C2H2 Transcription Factor Family	AT3G57670	82.540	1.89e-121	353

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Dere07g1955		None	None	None