Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1953 ATGAAATTTGGGAAGGTTCAGATCACGGATTTTGAAATCGTTACTTTTGTTTCCTTTCTTGTAAATCGAACGGAATTTTGGCTGTCAAAATTTCTGTTGAATTCTTTACGCTTTTTCTTTTGGTTAACGGCTGATGTTTCGAGAGTCGCACATAATGCTGCTCAAGATGTGTGTGTTGTTGACAGGATTGTTGAAGCTACCTCGCACCACATTCTGTCGAATTCAAAAGAGCTTTACCCTCTGTTTTTAAAGTATTGTTTTAATATGAATGATAATAGACAAATGGAGGTGCATTACATAGATACGGGCTTTCCATATACTGTTACGGAAAGCTTTATGGACTTCTTCGAAGGCCTAACGCATGTGCCAGTGAATTATGCCCATGCCGGACCCATGACTGATCAGGAAAGTGTATACTGGTCGATGAATATGAACCCCTATAAATTTGGAGTGTCTGGTCCTTTGGGTACATCTTATTTTGGTTATCCTGAGATGAATTTTCCCTTATCCTTACCAAGGATGGAGATCAACAGGGGAGAGTGGGAAGACCCTTCAACAATGACAATTGGGGAGCCTGCTACAACCGACTCTTCATCCAGAAGAGATGGAGTCACTGGCATGCAGACCATTCCCGAAGAATGCAGCCCAAATCATCAAGATTCCACTAGTACGCAGGTTGTATGGCAGCAAGACAACATTGATCCTGATAATATGACTTATGAGGAATTACTGGACTTGGGTGAGGCAGTTGGAACTCAAAGCAGAGGGCTTTCCAAAGAACTTATTGATTTGCTTCCCACATCAAAGTATAATTTCAGAAGCTTGTTTAAAAGAAAAAATTCTGGGAAAAGGTGTGTGATTTGTCAGATGACATACAAAAGAGGTGACCAACAAATGAAATTGCCCTGCACGCATGTTTACCATAGTGAATGCATTACGAAGTGGCTTAGCATCAACAAGAAATGCCCAGTCTGCAACGCTGAGGTATTTGGCGAGGATTCAAGGAATTAG 1011 0.4115 MKFGKVQITDFEIVTFVSFLVNRTEFWLSKFLLNSLRFFFWLTADVSRVAHNAAQDVCVVDRIVEATSHHILSNSKELYPLFLKYCFNMNDNRQMEVHYIDTGFPYTVTESFMDFFEGLTHVPVNYAHAGPMTDQESVYWSMNMNPYKFGVSGPLGTSYFGYPEMNFPLSLPRMEINRGEWEDPSTMTIGEPATTDSSSRRDGVTGMQTIPEECSPNHQDSTSTQVVWQQDNIDPDNMTYEELLDLGEAVGTQSRGLSKELIDLLPTSKYNFRSLFKRKNSGKRCVICQMTYKRGDQQMKLPCTHVYHSECITKWLSINKKCPVCNAEVFGEDSRN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1953 336 ProSiteProfiles Zinc finger RING-type profile. 285 326 IPR001841 -
Dere07g1953 336 MobiDBLite consensus disorder prediction 188 204 - -
Dere07g1953 336 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 92 332 IPR033276 GO:0004842|GO:0016567|GO:0046621
Dere07g1953 336 SMART ring_2 285 325 IPR001841 -
Dere07g1953 336 MobiDBLite consensus disorder prediction 182 204 - -
Dere07g1953 336 Pfam Ring finger domain 284 326 IPR001841 -
Dere07g1953 336 FunFam E3 ubiquitin ligase BIG BROTHER 247 330 - -
Dere07g1953 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 330 IPR013083 -
Dere07g1953 336 SUPERFAMILY RING/U-box 284 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1953 Dere-ChrDere07 32678182 32683481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1953 91 334 C3H Transcription Factor Family AT3G63530 56.504 1.40e-93 277