Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1948 ATGGTGAAAGACAAAATGAGGAACAGTAATAGTCTGAGTATGATGACGAACAATAAGAGCAAGCTCAGAAAAGGGCTGTGGTCACCTGAGGAAGACGAGAAGCTGATAAGGTACATGCTGACCAATGGACAAGGTTGCTGGAGTGACATAGCCAGAAATGCAGGCCTTCTTCGCTGTGGCAAAAGCTGTCGACTTCGTTGGATCAACTACCTCAGACCTGACCTCAAACGTGGTGCCTTTTCACCCCAAGAAGAACACCTCATCATTCACTTTCACTCCGTACTTGGCAATAGGTGGTCTCAAATTGCTGCACGTCTTCCTGGAAGAACAGACAATGAGATTAAAAATTTCTGGAACTCCACGTTGAAGAAAAGGCTAAAAAATAACAACACTACTTCCTTCTCTCCATCACCAAACAATTCATCGTCATCATCCTCATCGTCAGATCTTAAAAATCTTGCTTTGGGTGGGAATTCAAATATAATTGATCCCTTAATGTGCATGAATTATTCTAATTCGTCATCATCTTTATCGTCATCGTCAATGCAAATTCCTATGATTTTCGGGGACCAATTAATATCCGATCCATATTTTACATTCAATCATCGCTTCAACACAAACATTGGAGCTGGCAATTTTCCTATGCCTGCACAAGTTGGAAATATGGGAGATGGGATTTATAATGGAGATCATGGGATATTGCTAGAGCCTAATAGTAAAATGGAATGTGGTAGAAGCAATATTGAAGGCAATAGTGTCTCAATATTTGATGATATTAGTGTGAAAAGCCACTACAACCACTTCAATAATAGTTGCTTCAATCACACTGATGATCATCACATAATTCAGAGCTCTAAAGCAGAGGAATTAGAGGACTTGTTTGGATTTGGAAATAGCAAAAATAACAATAATATTATTAATAATAATAGTGGGCAATTAGGAGAAAACTTAATGGGAGATCAATGGGATTTGGAAGGTTTGATGCAAGATATATCTTCTTTTCCCCACCTTGATTTTTCCAAGCTAGTTGAATAA 1035 0.3855 MVKDKMRNSNSLSMMTNNKSKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGAFSPQEEHLIIHFHSVLGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKNNNTTSFSPSPNNSSSSSSSSDLKNLALGGNSNIIDPLMCMNYSNSSSSLSSSSMQIPMIFGDQLISDPYFTFNHRFNTNIGAGNFPMPAQVGNMGDGIYNGDHGILLEPNSKMECGRSNIEGNSVSIFDDISVKSHYNHFNNSCFNHTDDHHIIQSSKAEELEDLFGFGNSKNNNNIINNNSGQLGENLMGDQWDLEGLMQDISSFPHLDFSKLVE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1948 344 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Dere07g1948 344 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Dere07g1948 344 Gene3D - 21 77 - -
Dere07g1948 344 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Dere07g1948 344 Gene3D - 78 153 - -
Dere07g1948 344 FunFam MYB transcription factor 21 77 - -
Dere07g1948 344 CDD SANT 79 122 IPR001005 -
Dere07g1948 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Dere07g1948 344 SMART sant 76 124 IPR001005 -
Dere07g1948 344 SMART sant 23 73 IPR001005 -
Dere07g1948 344 FunFam Transcription factor MYB46 78 151 - -
Dere07g1948 344 PANTHER MYB DOMAIN PROTEIN 55 16 303 - -
Dere07g1948 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Dere07g1948 344 Pfam Myb-like DNA-binding domain 77 121 IPR001005 -
Dere07g1948 344 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Dere07g1948 344 MobiDBLite consensus disorder prediction 128 150 - -
Dere07g1948 344 CDD SANT 27 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1948 Dere-ChrDere07 32609017 32611327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1948 17 339 MYB Transcription Factor Family AT3G08500 47.851 1.92e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere07g1948 Myb_DNA-binding 8.1e-13 CL0123