Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1944 ATGTGCAGTGGTCCAGATAAATCGAAATCTACTTCAGCTTCATCTTCATCTGCTGTTGAAGGTGCAACTAACATCAAAGACATGAAAAAGCTAACTGTTCATACAGAAGATTCTTTCTCCAGCTTGCTGGAACTTGCTTCTAACAATGATGTTGAAGGCTTTAAGCTTTTGTTAGATAGGGATGCTACTTCAGTAAATGAAGTTGGGCTCTGGTATTGTCGCCAAATTGGATCAAAACAAATCATTCTTGAGGATAGAACTCCATTAATGGTTGCTGCAACCTATGGTAGTTTTGATGTTCTGAAGCTTATTCTCTCATATCCGGAGGCCAATGTTAATTTCTCATGTGGGATGAGTAAGAGCACTGCTCTTCACTGTGCTGCCTCTGGCGGCTCCAATAATGCAGTTGATGTTGTGAAGCTGCTTTTAGCAGCTGGTGCTGATCTCAATTGCATGGATGCTAGTGGAAATCGTCCTGTTGATGTTATTATTGTTCCTCCCAAGCTGCGGGTCATGAAAGCAATTTTGGAGGAACTTCTTTCTGATAATGCATCTGATGACTCTGTTGGTGGCTGCTCTATTCCTGTACCTGTTAATTCATCAAGTCCTGGTTTGCCTACCCATTTATTGTCTCCAGATAGTGGGTTGCCATCCTCTCCTTCTGGCTCACCATCTTCTCCTGTGGCTTCAAAGTTAGCTGATGCACCTGTTAGTTCTACCTCAGAGAAGAAAGAGTATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCTACTGATGAGTTTCGCATGTTCTCATTTAAGGTTCGTCCTTGTTCCCGTGCATATTCTCATGACTGGACTGAGTGTCCTTTTGTACATCCAGGAGAGAATGCCCGTAGGAGGGACCCCAGAAAATTCCATTACAGCTGTGTACCATGCCCTGATTTTCAAAAGGGTACCTGTAGACGGGGGGATATGTGTGAATATGCACATGGAGTATTTGAGTGCTGGCTACACCCAGCACAGTATCGCACACGGCCCTGCAAAGATGGTACAAATTGCAATAGACGGGTGTGTTTCTTTGCTCACACAGCAGAAGAGATGCGTCCGTTGTATGTGTCCACTGGATCTGCTGTCCCTTCTCCACGTGCATCTGCGCCTGCTCAAAGCGTCATGGATATGGCTGCTGCAATGAACCTATTGCCTGGTTCTCTATCATCAGTGTCTTCCATGTCTCCATCCCACTTTGCCCAACCAATGTCTCCATCTGCTAATGGCATCTCACACTCATCAGCAGCTTGGCCACAGCCCAATGTGCCAGCCCTTCATCTTCCAGGGAGTAACCTTCAATCTAGTCGCTTAAGATCTTCTCTTAGTGCTCGAGACATTCTGCCTCAGGATGTGAACATGTTGTCAGATTTTGATGGCCAGCAACACCTCTTGAATGATCTGGGCTGTTTCTCACAGCCCCGTCCTGGAGCTGTTTCTGTGAACCGATCTGGTCGGTCTAAGACACTAACTCAATCAAATCTTGAAGAGCTCTTTTCTAATGAAATTTCTTCATCTCCTCGATATTCTGATCCTGCAGCGGCTTCTGTTTTTTCCCCTACGCACAAATCTGCTGTTCTCAATCAGTTTCAACAGCTTCAAAGTATGTTGTCACCAATAAATACAAATGTTTTGTCTCCTAAGAATGTTGAGCATCCTCTATTACAGGCTCCATTTGGTGTGTCTTCTCCTGGAAGGATGTCACCTAGAAGTGTGGATCCTATATCTCCTATGAGCTCTCGGTTATCTCCATTTGCTCAGCGTGAGAAACAGCAGCAGCAACAGCTGCGAAGTCTTAGCTCAAGGGACCTTGGTTCCAAAATTCCCACCTCAGTTGTTGGGTCTCCTGTAAACTCATGGTCTAATTGGGGATCTCCTACTGGAAAAGTTGATTGGTCAGTAAATGGAGATGAATTAGGTCGAATGCGAAAATTGTCTTCATCTGAGCATGAGAACAATGGTGAGGAGCCTGACCTATCTTGGGTTCAATCCCTTGTCAAGGAATCCCCTCCTGAGATGATGAAAGAGAAGTTGGCAGCCTCTGGTCCCGTTGCATCGGCTGATAAACTAAATTCCATTTCTCAAATTGAATCCATTGATAATTCTGTTGTAGGAGCTTGGCTCGAGCAAATGCAGCTGGATCAGCTCGCAGTGTAG 2196 0.4485 MCSGPDKSKSTSASSSSAVEGATNIKDMKKLTVHTEDSFSSLLELASNNDVEGFKLLLDRDATSVNEVGLWYCRQIGSKQIILEDRTPLMVAATYGSFDVLKLILSYPEANVNFSCGMSKSTALHCAASGGSNNAVDVVKLLLAAGADLNCMDASGNRPVDVIIVPPKLRVMKAILEELLSDNASDDSVGGCSIPVPVNSSSPGLPTHLLSPDSGLPSSPSGSPSSPVASKLADAPVSSTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFQKGTCRRGDMCEYAHGVFECWLHPAQYRTRPCKDGTNCNRRVCFFAHTAEEMRPLYVSTGSAVPSPRASAPAQSVMDMAAAMNLLPGSLSSVSSMSPSHFAQPMSPSANGISHSSAAWPQPNVPALHLPGSNLQSSRLRSSLSARDILPQDVNMLSDFDGQQHLLNDLGCFSQPRPGAVSVNRSGRSKTLTQSNLEELFSNEISSSPRYSDPAAASVFSPTHKSAVLNQFQQLQSMLSPINTNVLSPKNVEHPLLQAPFGVSSPGRMSPRSVDPISPMSSRLSPFAQREKQQQQQLRSLSSRDLGSKIPTSVVGSPVNSWSNWGSPTGKVDWSVNGDELGRMRKLSSSEHENNGEEPDLSWVQSLVKESPPEMMKEKLAASGPVASADKLNSISQIESIDNSVVGAWLEQMQLDQLAV 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1944 731 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Dere07g1944 731 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Dere07g1944 731 SMART ANK_2a 84 114 IPR002110 GO:0005515
Dere07g1944 731 SMART ANK_2a 119 151 IPR002110 GO:0005515
Dere07g1944 731 SMART ANK_2a 37 67 IPR002110 GO:0005515
Dere07g1944 731 MobiDBLite consensus disorder prediction 203 237 - -
Dere07g1944 731 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 309 329 IPR000571 GO:0046872
Dere07g1944 731 SUPERFAMILY Ankyrin repeat 35 167 IPR036770 -
Dere07g1944 731 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Dere07g1944 731 FunFam Zinc finger CCCH domain-containing protein 66 262 330 - -
Dere07g1944 731 Gene3D - 304 367 - -
Dere07g1944 731 MobiDBLite consensus disorder prediction 586 624 - -
Dere07g1944 731 ProSiteProfiles Zinc finger C3H1-type profile. 309 331 IPR000571 GO:0046872
Dere07g1944 731 Pfam Ankyrin repeats (3 copies) 46 153 IPR002110 GO:0005515
Dere07g1944 731 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Dere07g1944 731 Gene3D - 13 195 IPR036770 -
Dere07g1944 731 PANTHER UNKEMPT FAMILY MEMBER 44 682 IPR045234 -
Dere07g1944 731 MobiDBLite consensus disorder prediction 203 249 - -
Dere07g1944 731 MobiDBLite consensus disorder prediction 570 624 - -
Dere07g1944 731 SMART c3hfinal6 339 362 IPR000571 GO:0046872
Dere07g1944 731 SMART c3hfinal6 304 330 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1944 Dere-ChrDere07 32507431 32509626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1944 36 728 C2H2 Transcription Factor Family AT5G12850 55.163 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere07g1944 Ank_2 1.4e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1944 07 32507431 32509626 Dere07g1944 07 32507431 32509626 ECH