Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1935 ATGCCAGGAAAGCCGGAGGTTGAAGATAGGAGGTTTGAAGGTTCAGGGCAGATTCAGTTTCAATCAGGCATTTACTCTCAGCCTTGGTGGCGTGGAGTGGAGGAAAATGCCTCCAAGTCTTCTTCTATAGATCAGATAAGTGGTTCAGTCATGAATTCATCAGCCAATGAAGGGGCTGACGGAGTTGGTTTTCTTAAACAGACACAGCATATGGTTTCACCTTCAATTTCTACAGCTGGTGGAAATGTTGGCAAAGAGCAGCAAAGCACCAAATATGTTTTGTCCTCAACACCACTTACCATGGGCAAACACCTTGGTCCAAATTCCAATGCCGAACTTCTTGGTCATTCAATTGTTTTAACCTCTTACCCTTACTCAGATGCACAGTATGCTGGAATCTTGACAACTCATGGGCCTCAAACTATGGTGAGTCCTCAGTTATTTGGAATGCATCATGCTAGAATGCCTTTGCCCCTTGAAATGGAAGAGGAGCCTGTCTATGTTAATGCAAAGCAGTATCATGGTATTTTGAGGCGAAGGCAGTCACGTGCTAAGGCTGAGCTTGAAAAGAGAGTTATCAAAGCTAGAAAGCCATATCTTCACGAATCTCGCCACCTACATGCTATGAGAAGGGCAAGAGGTTGTGGGGGTCGCTTTCTCAATACGAAGAAGCTTGAAAGTAAAAATTCCGATGTCACTACAGAAAAAGGCAAGAACAGTGGTGCAAACCCCTCAACAATATCTGGCAGCTTACCCCCCTCTGACCACCCTCTTATCAACGACGAGATTTTCGGCTCATCTAAGAATCATCGTAGTGTATCGGTGTCCATGGCTCGGAACATGCAAAATGGAGACTTCTTTGGTCAAGAGAGGGGAAGCATGCAGATTTATGGAGCCCCAAATCGGGCTATTAAATAA 918 0.4488 MPGKPEVEDRRFEGSGQIQFQSGIYSQPWWRGVEENASKSSSIDQISGSVMNSSANEGADGVGFLKQTQHMVSPSISTAGGNVGKEQQSTKYVLSSTPLTMGKHLGPNSNAELLGHSIVLTSYPYSDAQYAGILTTHGPQTMVSPQLFGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKRVIKARKPYLHESRHLHAMRRARGCGGRFLNTKKLESKNSDVTTEKGKNSGANPSTISGSLPPSDHPLINDEIFGSSKNHRSVSVSMARNMQNGDFFGQERGSMQIYGAPNRAIK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1935 305 ProSitePatterns NF-YA/HAP2 subunit signature. 167 187 IPR018362 GO:0003677|GO:0016602
Dere07g1935 305 SMART cbf3 161 222 IPR001289 GO:0003700|GO:0006355
Dere07g1935 305 Gene3D - 162 223 - -
Dere07g1935 305 MobiDBLite consensus disorder prediction 234 253 - -
Dere07g1935 305 PRINTS CCAAT-binding transcription factor subunit B signature 196 219 IPR001289 GO:0003700|GO:0006355
Dere07g1935 305 PRINTS CCAAT-binding transcription factor subunit B signature 165 187 IPR001289 GO:0003700|GO:0006355
Dere07g1935 305 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 219 IPR001289 GO:0003700|GO:0006355
Dere07g1935 305 ProSiteProfiles NF-YA/HAP2 family profile. 162 222 IPR001289 GO:0003700|GO:0006355
Dere07g1935 305 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 61 270 IPR001289 GO:0003700|GO:0006355
Dere07g1935 305 MobiDBLite consensus disorder prediction 219 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1935 Dere-ChrDere07 32372174 32375865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1935 21 245 CCAAT-HAP2 Transcription Factor Family AT5G12840 39.419 3.41e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dere07g1935 CBFB_NFYA 1.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1935 07 32372174 32375865 Dere07g1935 07 32372174 32375865 ECH