Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1903 ATGGCGTGCATAAAAGGGGTGAATCGATCAGCGTCCGTGGCCCTGGCACCGGACGCACCGTACATGGCGGCCGGAACCATGGCGGGGGCAGTTGATCTGTCCTTCAGCTCCTCCGCTAATCTCGAAATATTCAAGCTTGATTTCCAGACCGACGATCCGGAGCTGCCCTTGGTCGGGGAGTGCCCGAGCTCTGAGCGGTTCAATCGTCTGTCTTGGGGGAAGGGTATTTCTGCCTCTGAAGGTTTCTCCCTCGGGCTCGTTGCTGGTGGGCTAGTCGATGGGAACATTGAACTCTGGAATCCTCTCACTCTGATCCGTTCAGAGGCAAAAGAAAGTGCTCTTGTTGGACATCTTGTGAGGCATAAAGGGCCTGTTCGTGGCCTCGAGTTTAATGACATTGCACCTAATCTTCTTGCATCTGGGGCTGAGGATGGTGAAATTTGCATATGGGATTTGGCCAATCCTTCAGAGCCTTCTCATTTTCCACCTCTCAGGGGTAGTGGCTCTGCTTCCCAGGGGGAAATTTCATTCTTATCTTGGAATAGCAAAGTCCAACACATATTAGCATCAACTTCATATAATGGGACTACTGTGGTCTGGGACCTGAGGAAGCAGAAGCCAGTTATAAGCTTTACAGACTCAGTTAGAAGGCGGTGTTCAGTTTTGCAGTGGAATCCTGATTTTGCCACTGAGCTAGTTGTTGCATCAGATGAAGATGGTTCTCCTTCTGTGAGGCTCTGGGATATGAGGAATATAATGACACCAATTAAAGAGTTTGTGGGACATAGTAGAGGTGTAATTGCAATGTCATGGTGTCCCTATGATAGCTATTATTTGCTTACCTGTGCCAAAGATAGTCGAACCATATGCTGGGACACACATTCCGGAGAGATTTTACGTGAATTGCCTGCTGGGACCAACTGGAACTTTGATGTGCATTGGTATCCTAAAATACCTGGAGTAATTTCAGCATCTTCCTTCGATGGAAAAATTGGCATCTATAATGTCGAGGGTTGCAGTCGATATGGTGTTGGGCAAAATGATCTTGGTGCAGTATCTCTAAGAGCTCCAAAATGGTATAAACGCCCTGTTGGGGTGTCTTTTGGTTTTGGTGGCAAGCTTGTATCTTTTAATCCCAAGTCATCTGCCACAGGTGCTGCCACTGGGGTTTCAGAGGTTTATGTGCATAATATGGTTACTGAACATAGTTTAGTGAGTCGTTCCTCTGAATTTGAAGCTGCAATACATAATGGGGAAAGGTCTTTACTAAGGCTTTTATGTGACAAAAAATCTCAGGAATCAGAATCTGAGGAGGAAAGGGAAACATGGGGCTTCTTGAAGGTTATGTTTGAAGATGATGGGACAGCACGAACAAAACTACTCACACACCTTGGTTTTACTGTTCCTAGTGAAGAAAAAGACACAGCTGTAGATGATCTATCCAAAGAAGTCAATGCTCTTGGACTTGATGAGACAACTGTTGACAAAGTAGCATCTGGGGCTACTAAGGAATCTACTGTTTTCCCTTCTGATAATGGGGAGGATTTCTTTAACAATCTTCCTAGTCCCAAAGCTGAGTCACCTTTATCTACCTCCGGTGTTAATGCGGATAATGCCAATGGTTTGGAGAAGATCCAAGAAGATTTGGAAGTGGAGGAGAGCAATGATCCTACATTTGATGATGGTGTTCAGCGCGCTTTAGTTCTTGGGGACTACAAAGGGGCTGTTGCACTATGCATATCTGCAAATAAGTGGGCTGATGCTCTAGTTATTGCTCATGTAGGTAGTGCTTCATTGTGGGAAAGTACACGGGACCAATACCTTAAGAGAAGCAGATCAGCATACTTAAAGATTGTCTCTGCGATGGTGAGCAACGATCTCTTAAGCCTTGTGAACACCAGGCCTCTGAAATTTTGGAAAGAGACTCTTGCTCTTCTTTGTAGTTTTGCACAGAGAGACGAATGGACAATGCTTTGTGACACACTTGCTTCAAAACTCATTATGGCCGGAAATACGTTAGCTGCAACTCTCTGTTATATATGTGCTGGAAATATTGATAAAACGGTTGAAGTTTGGTCAAAGAATCTGCAGAGTGAACATGAAGGAAAATCTTATGTTGATGTTCTTCAGGATTTGATGGAAAAGACTATTGTTCTTGCCTTAGCAACTGGGCAGAAGCGATTTAGTGCATCTCTTTGCAAGCTTGTTGAGAAATATGCTGAAATTTTAGCAAGTCAAGGGCTGTTGACTACAGCAATGGAGTATTTAAAACTTTTAGGTTCTGATGAACTGTCACCTGAACTCTTAATCCTAAAAGATCGGATTGCTCTTTCTACACAACCTGAAATAGATGATAAGACTACTGCGTTTGAAAATACTCAATCACAGACTGGATCATTTTATGGCACTGATCATTCCAATTATAGTAGAAATTATTATCAGGAGTCAGTATCCACACAAGTGCAGCGTGGTGTTTCTGGAATTCCATATGATGAAAATTATCCACAGCCTTTTGATCCTTCATATGGAAGAGGATATGCTGGTTCTGCTCCATATCAGCAACCTCAACAACCTAATTTGTTTGTACCATCACAGGCACCTCAGGTTCCCCAGACTCCTCAGCCAAACTTTTCAACTGCTCCTGTCACACAACCTCCTTTGAGGTCTTTTGTTCCTCACACTCCTCCAGTGCTAAGAAATGTTGAGCAATATCAGCAGCCGACGTTGGGTTCTCAGTTGTATCCTACAACTACCAATCCACCTTACCAACCCACACCCCCTGCCACATCTCAAATGGGTTTGGTTCATGGCCAGAAGTTGTCGCAGGTTGTAGCGCCCACCCCAAATCCAAGGGGATTCATGCCAGTCTCCGGTTCTGGTGTTGCACAAAGACCTGGGATGGGATCAATGCAACCTCCCAGTCCCCCTCAGGCAGCACCTGTGCAACCAGCTCCAGCACCAGCTGCTCCACCACCTACTGTGCAGACGGTCGATACATCAAATGTACCTGTGCACCAAAAGCCCATTGTCACAACGTTGACAAGGCTTTTCAATGAGACATCAGAAGCATTGGGAGGTTCACGTGCAAATCCAGCTAAAAAGCGGGAGATAGAAGACAACTCCAAGAAACTTGGAGGATTATTCGCAAAATTGAACAGTGGGGACATCTCTAAAAATGCTGCTGATAAGCTCCTCCAGCTGTGCCAGGCGTTAGACAAAGGCGATTTCAGTACTGCCCTACAAATTCAGGTACTTCTTACCACAACCGAGTGGGATGAATGCCAGTCCTGGTTAGGTTCACTGAAGCGAATGATCAAGTCAAGGCAGAGTGTGAGATTAAATTAA 3345 0.4496 MACIKGVNRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQTDDPELPLVGECPSSERFNRLSWGKGISASEGFSLGLVAGGLVDGNIELWNPLTLIRSEAKESALVGHLVRHKGPVRGLEFNDIAPNLLASGAEDGEICIWDLANPSEPSHFPPLRGSGSASQGEISFLSWNSKVQHILASTSYNGTTVVWDLRKQKPVISFTDSVRRRCSVLQWNPDFATELVVASDEDGSPSVRLWDMRNIMTPIKEFVGHSRGVIAMSWCPYDSYYLLTCAKDSRTICWDTHSGEILRELPAGTNWNFDVHWYPKIPGVISASSFDGKIGIYNVEGCSRYGVGQNDLGAVSLRAPKWYKRPVGVSFGFGGKLVSFNPKSSATGAATGVSEVYVHNMVTEHSLVSRSSEFEAAIHNGERSLLRLLCDKKSQESESEEERETWGFLKVMFEDDGTARTKLLTHLGFTVPSEEKDTAVDDLSKEVNALGLDETTVDKVASGATKESTVFPSDNGEDFFNNLPSPKAESPLSTSGVNADNANGLEKIQEDLEVEESNDPTFDDGVQRALVLGDYKGAVALCISANKWADALVIAHVGSASLWESTRDQYLKRSRSAYLKIVSAMVSNDLLSLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLIMAGNTLAATLCYICAGNIDKTVEVWSKNLQSEHEGKSYVDVLQDLMEKTIVLALATGQKRFSASLCKLVEKYAEILASQGLLTTAMEYLKLLGSDELSPELLILKDRIALSTQPEIDDKTTAFENTQSQTGSFYGTDHSNYSRNYYQESVSTQVQRGVSGIPYDENYPQPFDPSYGRGYAGSAPYQQPQQPNLFVPSQAPQVPQTPQPNFSTAPVTQPPLRSFVPHTPPVLRNVEQYQQPTLGSQLYPTTTNPPYQPTPPATSQMGLVHGQKLSQVVAPTPNPRGFMPVSGSGVAQRPGMGSMQPPSPPQAAPVQPAPAPAAPPPTVQTVDTSNVPVHQKPIVTTLTRLFNETSEALGGSRANPAKKREIEDNSKKLGGLFAKLNSGDISKNAADKLLQLCQALDKGDFSTALQIQVLLTTTEWDECQSWLGSLKRMIKSRQSVRLN 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1903 1114 MobiDBLite consensus disorder prediction 969 992 - -
Dere07g1903 1114 FunFam Protein transport protein SEC31 homolog B 353 779 - -
Dere07g1903 1114 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Dere07g1903 1114 Gene3D - 1 337 IPR015943 GO:0005515
Dere07g1903 1114 SMART WD40_4 252 292 IPR001680 GO:0005515
Dere07g1903 1114 SMART WD40_4 161 201 IPR001680 GO:0005515
Dere07g1903 1114 SMART WD40_4 111 151 IPR001680 GO:0005515
Dere07g1903 1114 SMART WD40_4 204 248 IPR001680 GO:0005515
Dere07g1903 1114 SMART WD40_4 295 335 IPR001680 GO:0005515
Dere07g1903 1114 SUPERFAMILY WD40 repeat-like 12 337 IPR036322 GO:0005515
Dere07g1903 1114 Pfam Sec23-binding domain of Sec16 563 758 IPR024298 -
Dere07g1903 1114 FunFam Protein transport protein SEC31 homolog B 1 337 - -
Dere07g1903 1114 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Dere07g1903 1114 Gene3D - 352 779 - -
Dere07g1903 1114 MobiDBLite consensus disorder prediction 948 999 - -
Dere07g1903 1114 MobiDBLite consensus disorder prediction 833 858 - -
Dere07g1903 1114 FunFam Protein transport protein SEC31 homolog B 998 1112 - -
Dere07g1903 1114 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 160 IPR001680 GO:0005515
Dere07g1903 1114 Pfam WD domain, G-beta repeat 115 151 IPR001680 GO:0005515
Dere07g1903 1114 Gene3D Functional domain of the splicing factor Prp18 998 1112 - -
Dere07g1903 1114 PANTHER SEC31-RELATED PROTEIN 3 1109 IPR040251 GO:0006888
Dere07g1903 1114 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1903 Dere-ChrDere07 31071480 31082287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1903 118 352 Miscellaneous Gene Families AT5G08390 23.207 3.14e-10 62.8