Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1885 ATGTCTTCTTCACTTATCGTCTCTCTGTTCTCTGCTCCTTCAGGGTACCTAAAAGCCCTTCTTAATCTCGATTCGTTTTTTATACCCGACCCTACTCCTGTTTCCGATACAGATTCTACTCCTAAATTAAGTTCTATCATGGTCCTACTATTTGGGTCATTTACTGAAGGTGAAACCAGATCATTGCTGCAAAAGCAGCCTTTTGGGGGAAATGAAAAGGCTGTGGAGAAGAAAAAACTGCAATTTGGTTTGTTGAACATTGTATCTGGAGGATCTTTAGGTGCTATTACCGATGTGTCAAGCAGTCAGCTAAATTCAACTAGAGCACCAGATAGTATTCCTCTCACAGAATCTTATAAGTGCAATGGAGTCCAGATTGTTAACACAGTTGGTATTTTACCTGAAGTATCAGGAACAATAAATAAGAATGGCAACATTACCAGTTGCTCCCTCGGTCCCCCAAATACAATGGGTGCAAAAGATGTTGAGAAAGATAAAGTATCTTCTGCTATGTTATATGATGAGGATGGCTTTAATTTTACTAAGTTGAACCTAAATGCTTCTCAGACTGAAAGCCCGAAGAATGCATCCAAAAATGGAAGCATCAATCATTCTTCCTTAAAATTATCTGATCAAGACTCCAAAAAAGAACCAAATGGGCATGTTGACCACTTCAAAGTCTTACTCCCAAGAGGCCTTATTAACTCTGGGAATTTATGCTTTCTGAATGCTACAGTGCAGGCGCTCTTGTCTTGTTCTCCTTTTGTTCAACTTTTGCAGAAATTAAGAACTCGCAATATTCCTAAGGTTGGCTATCCCATATTGACTGCATTCACTCAGTTCATGACACAATTTGACATGCCAAGTGGCACAAATTTGAAGAAGAATGATATGGCTACTCTTGAGACTGGAAGTCCATTTCGTCCTGTTATGTTTGAAAGTGTTCTGAAAAAGTTTACTCCAGATGTATCAAATGGCATATATGGAAGACCAAGGCAGGAAGATGCCCAGGAGTTTCTGAGCTTTGTAATGGATCAATTGCATGATGAATTACTGAAACTTGATGGACATTCTTCAACCGTTAATGGGGGCAATTCTTCTCTAGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGACCAAAGAACAAGTCTGCTGTAACAAGGACTCAAAGTTATGTTCCTTCCGAATTAAGTGATATTTTTGGAGGTCAATTGAGAAGTTTGGTGAGGCCTAAAGGAAACAGAGCATCTGCCACCATTCAACCATATCTCTTGCTCCACCTAGACATTTATCCTGATGCTGTTCACACAATTGATGACGCGCTTCGTGTGTTTTCTGCTCCAGAAACTCTTGAAGGGTACAGAACATCAATAAATGGAAAGGCTGGTGTTGTGACTGCAAGAAAATCTGTACAGATACAAACACTTCCGAAGATAATGATATTGCACCTAATGCGTTTTGGTTATGGTAGTCAGGGAAGCATAAAGTTGCACAAGCCTGTGCACTTTCCCCTAGAGTTGGTGTTGGGTCGTGACTTGCTTGTATCACCATCTACTGAGGGTCGAAAATATGAACTTGTTGCCACAATTACTCACCACGGAAGAGAACCTTCAAAGGGGCACTACACCACCGATGCCCACTACTCAAATGGTCAGTGGCTACGGTTCGATGATGCTTCCGTCTCTGCCATTGGAACAAATAAGGTGTTGCATGATCAGGCATATGTCCTTTTCTACAGACAGCTATGA 1755 0.4091 MSSSLIVSLFSAPSGYLKALLNLDSFFIPDPTPVSDTDSTPKLSSIMVLLFGSFTEGETRSLLQKQPFGGNEKAVEKKKLQFGLLNIVSGGSLGAITDVSSSQLNSTRAPDSIPLTESYKCNGVQIVNTVGILPEVSGTINKNGNITSCSLGPPNTMGAKDVEKDKVSSAMLYDEDGFNFTKLNLNASQTESPKNASKNGSINHSSLKLSDQDSKKEPNGHVDHFKVLLPRGLINSGNLCFLNATVQALLSCSPFVQLLQKLRTRNIPKVGYPILTAFTQFMTQFDMPSGTNLKKNDMATLETGSPFRPVMFESVLKKFTPDVSNGIYGRPRQEDAQEFLSFVMDQLHDELLKLDGHSSTVNGGNSSLVSSVEDDEWETVGPKNKSAVTRTQSYVPSELSDIFGGQLRSLVRPKGNRASATIQPYLLLHLDIYPDAVHTIDDALRVFSAPETLEGYRTSINGKAGVVTARKSVQIQTLPKIMILHLMRFGYGSQGSIKLHKPVHFPLELVLGRDLLVSPSTEGRKYELVATITHHGREPSKGHYTTDAHYSNGQWLRFDDASVSAIGTNKVLHDQAYVLFYRQL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1885 584 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 526 544 IPR018200 GO:0004843|GO:0006511
Dere07g1885 584 Pfam Ubiquitin carboxyl-terminal hydrolase 232 581 IPR001394 GO:0004843|GO:0016579
Dere07g1885 584 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 232 247 IPR018200 GO:0004843|GO:0006511
Dere07g1885 584 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 231 584 IPR028889 -
Dere07g1885 584 MobiDBLite consensus disorder prediction 189 218 - -
Dere07g1885 584 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 168 583 - -
Dere07g1885 584 FunFam Ubiquitin carboxyl-terminal hydrolase 223 583 - -
Dere07g1885 584 Gene3D Cysteine proteinases 225 583 - -
Dere07g1885 584 SUPERFAMILY Cysteine proteinases 226 582 IPR038765 -
Dere07g1885 584 MobiDBLite consensus disorder prediction 189 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1885 Dere-ChrDere07 30847386 30853717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1885 228 584 Miscellaneous Gene Families AT2G24640 28.219 1.87e-22 99.0