Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1878 ATGGCTATGGATTCCAAAGAAAATCATCATCACGAGCCATCTCTCAAGGAAGACGTCGTCCACGATGACTCTGCGTGTCTTTCTGCCATGCTTGGGTGTTGCAGCCAGATCTACTCTGCAGCTCTGAACGCTGCTCTCGAGCTCAAGCTGTTCGATATCATAGCTAGGGAACAAGGAAGACACGTGTCGGCCTCTGAGGTCGCCTCTCACCTTCCGACCTCGACCCATCACCCTCACTTGGCTTTCAGGATCGATCGCATCCTGAGGCTTCTGGCGAGTCACTCTCTTCTCACTTGCTCCTATCGTCGCAATCAAGATGGTGGCACAGAGAGACTCTATGCGATTTCTCCCTCTGGGAAGTACTTCGTTGGAGGTGACGATAATGGTGGATTCTTGGCTCTGTTCTCCTCGTTCATATGTCATCGAGCCCTTGTGGATGCCTGGCTAAATTTTAAGGATGCAATTATAGACGAAGACAATGACCTATTCAAGAAAGTTCATGGAATGCCCATGTACCAATACGCAGAGATAGATCCAAAATGGAACACCATTTTCAACAAGGCAATGGCCAACATTTGCAATATAGAAATGAAGAGGATTCTTGAAATATACAAAGGCTTTGAGGGGATTTCAATACTTGTTGACGTAGGAGGTGGCACTGGCCAAAACCTAAGAATGATACTCTCCAAGTACCCTTCAATTATGGGCATTAATTTCGATTTGCCCCAAGTCGTTCAAAATGCACCACCCCATCTAGGGATTGAGCACGTTGGAGGAGATATGTTTGCAAGTGTTCCAAAAGGGGATGCTATAATATTGAAGGCTGTATGCCACAATTGGTCAGATGAAAATAGCATAAAAGTGCTGAGCAAATGCCATGAAGCATTGCCAGAAAATGGGAAGGTGATAGTTGTGGAGTTCATAATGCCAGAAGCAGTTGGACCCACAGAAGAAGCCAAGTTCGTTTCAAGCATGGACAACCTCATGTTCCTTCATGATGGTAGAGAAAGAACTGAGGAAGAGTTTGAGTCTCTCTGCAAACGCTCTGGATTTTCTAGATTCAAAGTTGCTTGCCGTGCCTTCTCTGTTCTAGGAGTCATGGAATTCTACAAATAA 1116 0.4552 MAMDSKENHHHEPSLKEDVVHDDSACLSAMLGCCSQIYSAALNAALELKLFDIIAREQGRHVSASEVASHLPTSTHHPHLAFRIDRILRLLASHSLLTCSYRRNQDGGTERLYAISPSGKYFVGGDDNGGFLALFSSFICHRALVDAWLNFKDAIIDEDNDLFKKVHGMPMYQYAEIDPKWNTIFNKAMANICNIEMKRILEIYKGFEGISILVDVGGGTGQNLRMILSKYPSIMGINFDLPQVVQNAPPHLGIEHVGGDMFASVPKGDAIILKAVCHNWSDENSIKVLSKCHEALPENGKVIVVEFIMPEAVGPTEEAKFVSSMDNLMFLHDGRERTEEEFESLCKRSGFSRFKVACRAFSVLGVMEFYK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1878 371 PIRSF O-mtase 5 371 IPR016461 GO:0008168
Dere07g1878 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 369 IPR029063 -
Dere07g1878 371 CDD AdoMet_MTases 213 309 - -
Dere07g1878 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 371 IPR016461 GO:0008168
Dere07g1878 371 PANTHER O-METHYLTRANSFERASE 38 361 IPR016461 GO:0008168
Dere07g1878 371 SUPERFAMILY "Winged helix" DNA-binding domain 23 127 IPR036390 -
Dere07g1878 371 Gene3D - 8 122 IPR036388 -
Dere07g1878 371 Gene3D Vaccinia Virus protein VP39 125 371 IPR029063 -
Dere07g1878 371 FunFam Caffeic acid 3-O-methyltransferase 5 122 - -
Dere07g1878 371 FunFam Caffeic acid O-methyltransferase 126 371 - -
Dere07g1878 371 Pfam Dimerisation domain 41 92 IPR012967 GO:0046983
Dere07g1878 371 Pfam O-methyltransferase domain 148 352 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1878 Dere-ChrDere07 30746443 30750784 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1878 12 363 Monolignol Biosynthesis Gene Families AT5G54160 48.588 6.23e-113 332