Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1876 ATGAATCAATTCTCCATGGCTATGGATTATAAAGAGACGGACGAGCTAGCTCATAAGGAAGAAGACGATGCATCGTTGCTTTCTGCGTTGCTTCTTCAGAGCACTCAGATCTTCTCTGCAGCACTAAACGCTGCGATTGATCTGGAGCTGTTCGACATTATAGCCAGCCAAAATGGAAGGCACGTGTCCGCCTCTGAGGTCGCCTCTCACCTTCCAGCTTCAACACAACACCAACACTTGGCTTCCAGGATCGATCGGATCTTGAGGCTTCTTTCGAATCATTGTCTTCTCACTTGTTCATGTCGCGTCAACGAAGACAGCGTGACCGAGAGAGTCTATGGTGTTTCTCCGGTTGGGAAGCACTTTGTTAGTGGATCCATGAATTTCAAGCCTATCTTTTGTCATCGACCACTTATGGATTGCTGGCTCAATTTCAAGGATGCAATAATAGAGGAAGACAGTGACTTGTTCAAGAAAGTTCATGGAATGCCCATGTACCAATACGCAAAGACAGATCCAACATGGAACACCACTTTCAACAAAGCAATGGCCAACTTTTGCTATATAGAGATGAAGAGGATTCTTGACATGTACAAAGGCTTTGAGGGAATTTCAACCCTTGTTGATGTAGGAGGTGGCAATGGCCAAAACTTAAAAATGATACTCTCCAAGTATCCTTCAATCAAGGGCATTAATTTTGATTTGCCCCAAGTCATTCAAAATGCACCACCCCATCCTGGGATTGAGCATGTTGGAGGAGATATGTTTGTGAGTGTTCCAAAAGGGGATGCCATAATATTAAAGGCTGTATGCCACAATTGGTCAGATGAAAGTAGCATAGAAGTGCTGAGAAAATGTCATGGAGCATTGCCAGAAAATGGGAAAGTAATAGTTGTGGAGTTCATAATGCCAGAAGCAGTAGGGCCAACGGAAGAAGCCAAGTTCGTTTCAAACATGGACACCCTCATGTTCCTTCATGACGGTAGAGAAAGAACTGAGAAAGAGTTTGAGTCTCTCTGCAAACGCTCTGGATTTTCTGGCTTTAAAGTTGCTTGTCGTGCCTTCCATGCTCTAGGAGTCATGGAATTTTACAAATGA 1098 0.439 MNQFSMAMDYKETDELAHKEEDDASLLSALLLQSTQIFSAALNAAIDLELFDIIASQNGRHVSASEVASHLPASTQHQHLASRIDRILRLLSNHCLLTCSCRVNEDSVTERVYGVSPVGKHFVSGSMNFKPIFCHRPLMDCWLNFKDAIIEEDSDLFKKVHGMPMYQYAKTDPTWNTTFNKAMANFCYIEMKRILDMYKGFEGISTLVDVGGGNGQNLKMILSKYPSIKGINFDLPQVIQNAPPHPGIEHVGGDMFVSVPKGDAIILKAVCHNWSDESSIEVLRKCHGALPENGKVIVVEFIMPEAVGPTEEAKFVSNMDTLMFLHDGRERTEKEFESLCKRSGFSGFKVACRAFHALGVMEFYK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1876 365 FunFam Caffeic acid 3-O-methyltransferase 8 122 - -
Dere07g1876 365 Pfam O-methyltransferase domain 142 346 IPR001077 GO:0008171
Dere07g1876 365 Pfam Dimerisation domain 41 92 IPR012967 GO:0046983
Dere07g1876 365 SUPERFAMILY "Winged helix" DNA-binding domain 22 125 IPR036390 -
Dere07g1876 365 PANTHER O-METHYLTRANSFERASE 30 355 IPR016461 GO:0008168
Dere07g1876 365 Gene3D - 37 194 IPR036388 -
Dere07g1876 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 365 IPR016461 GO:0008168
Dere07g1876 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 363 IPR029063 -
Dere07g1876 365 FunFam Caffeic acid O-methyltransferase 122 365 - -
Dere07g1876 365 PIRSF O-mtase 6 365 IPR016461 GO:0008168
Dere07g1876 365 Gene3D Vaccinia Virus protein VP39 176 354 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1876 Dere-ChrDere07 30681266 30686611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1876 22 365 Monolignol Biosynthesis Gene Families AT5G54160 48.148 5.78e-111 327