Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1853 ATGACGAAACTTCCACGGGGCCATCTACCTACTTTCCTCCTATCTCTCTCATTGCCTCTGGACCCAATCTTCTGGATTTTATATTCTCTGCAATGGATTTTTGATCAGTTCATCATTTCAGAGCTGGTTGTTGCTTGGAAGAGCATGGCTTCTAGTAATCCATTCCTTGATGACATACGGAGCAAATCTGATGTTGATCCTCCTTCAAATGAAGAGCCGATGGATATCAGTGAGCTAGTGAATGATCCCACACAAACTGCTTTAAAATCTAATGTGACTGTTACAAGCAGTGTCCGTGAGCTTTTAGAGTGCCCTGTGTGTTTGAATGCAATGTATCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCAGGTTGCAAACCCAGGGTCCACAATCGGTGCCCAACTTGTAGACATGAGCTTGGCAATATCAGATGCCTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCTTGTAAATATCAACCTTTTGGGTGTATGGGCATATATCCATATTACTGCAAGCTAAAACATGAATCTCAATGTGCATATAGACCTTATAACTGTCCATATGCTGGTTCAGAATGTGCAGTCATTGGTGATATCCCGTATTTGGTGGCCCATTTGAAAGACGATCACAAAGTGGACATGCACAGTGGTAGCACTTTTAACCATCGCTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACGTGGATGCTTACGGTCTTCAGTTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTGGGAATGGCTCCAGTCTACATAGCCTTCTTGCGGTTTATGGGCGATGATAACGAGGCAAAGAACTATAGCTACAGTCTTGAGGTTGGTGGAAATGGAAGGAAAATGACTTGGCAGGGCGTGCCTAGAAGTATTAGGGACAGCCACCGCAAGGTTCGTGATAGTTTTGATGGTCTCATCATTCAAAGGAACATGGCTCTCTTCTTTTCTGGTGGTGACAGGAAGGAATTGAAGCTGCGGGTTACTGGGAGAATTTGGAAAGAACAGTAA 1059 0.4353 MTKLPRGHLPTFLLSLSLPLDPIFWILYSLQWIFDQFIISELVVAWKSMASSNPFLDDIRSKSDVDPPSNEEPMDISELVNDPTQTALKSNVTVTSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQPFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECAVIGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1853 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 212 IPR013083 -
Dere07g1853 352 FunFam E3 ubiquitin-protein ligase SINAT5-like 62 155 - -
Dere07g1853 352 FunFam E3 ubiquitin-protein ligase SINAT5-like 213 345 - -
Dere07g1853 352 FunFam E3 ubiquitin-protein ligase SINAT3 156 212 - -
Dere07g1853 352 SUPERFAMILY TRAF domain-like 157 349 - -
Dere07g1853 352 SUPERFAMILY RING/U-box 98 145 - -
Dere07g1853 352 ProSiteProfiles Zinc finger RING-type profile. 104 140 IPR001841 -
Dere07g1853 352 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 213 345 IPR008974 GO:0005515
Dere07g1853 352 CDD RING-HC_SIAHs 102 140 - -
Dere07g1853 352 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 88 351 - -
Dere07g1853 352 Pfam Seven in absentia protein family 146 345 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dere07g1853 352 CDD Sina 218 346 - -
Dere07g1853 352 ProSiteProfiles Zinc finger SIAH-type profile. 157 217 IPR013010 GO:0008270
Dere07g1853 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1853 Dere-ChrDere07 30086054 30093687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1853 71 352 C3H Transcription Factor Family AT2G41980 74.648 1.14e-159 447