Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere07g1846 | ATGGTAGCAAATCAAGTGAACATAGAAAGATATCCAAAAACAAAGGTTGAAGATCATGGAGATTCGCCAAACCCCAATGACAATATGTGCTCGATATGTCTCTGTGAGTACCAACCGAAGGAGTTATTGAGGATTGTACCAGATTGCAACCACTATTTCCATGCAAATTGCTTAGAAGAGTGGCTTAAGATTAATGCTTCTTGCCCTTTGTGTTGGAATTTACCCTAG | 228 | 0.3947 | MVANQVNIERYPKTKVEDHGDSPNPNDNMCSICLCEYQPKELLRIVPDCNHYFHANCLEEWLKINASCPLCWNLP | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere07g1846 | 75 | SMART | ring_2 | 30 | 71 | IPR001841 | - | |
| Dere07g1846 | 75 | PANTHER | RING-H2 FINGER PROTEIN ATL67 | 4 | 75 | IPR044289 | GO:0016567|GO:0016740 | |
| Dere07g1846 | 75 | Pfam | Ring finger domain | 28 | 71 | IPR001841 | - | |
| Dere07g1846 | 75 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Dere07g1846 | 75 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 75 | IPR013083 | - | |
| Dere07g1846 | 75 | SUPERFAMILY | RING/U-box | 24 | 72 | - | - | |
| Dere07g1846 | 75 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 71 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere07g1846 | Dere-ChrDere07 | 29944469 | 29944696 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere07g1846 | 8 | 75 | C3H Transcription Factor Family | AT5G07040 | 50.000 | 1.76e-22 | 82.8 |