Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere07g1841 | ATGCTGGTTCGGTGGCGCAAACGTCATTGCTTCTTAGAGATTATTGGAATGGTTTTTGTTCAAATTCCCGCCCAATTTATCCTCGGCGTATGTGCAATCGTTGTCAAGGGTCATTGGAGCAATCTGTTGAAGTTGAAGAAGGCGTCTGCTCTAACATCTACCACCATTCACGAGGTACTTTTGCAACTCTCCCTCCATGGCTATGCTCCATCTCATTCCTTGCCATTCTTCAAGTGGGTCGAGTCAATCCCAAATTATAAGCACTCTTTGCAATGTTCATGGTCCATGCTTCATATCCTTGTTAAGCATAAACATTTTAGAATTGCACAAGAGATGCTTGAGAAAATTGCCCATAAGGATTTTCTGTCATCGCCTTCAGTTTTGAGAACTTTGGTTGGAATTCAAGATGACCCAGAAGTAAATTCGCACATATTGAGCTGGCTTGTAATACTTTATACGAAATCAAAGTTGACCGATGATGCCATTCAGGTTTTTGAGCAGATGAGGTTATATAAGTTGAACCCTCATTTGCATGCCTGTACTGTGCTTTTGAATTCTTTGGTCAAGGATGGGGTAACTAACATGGTGTGGAAGATTTACAAACAAATGGTTCAAGTTGGGGTTTTACCTAATATACATATCTATAATGTGTTAATCCATGCTTGTTCCAAATCAAGAGATTTGGAGAGGGCAGAAAAATTACTAAATGAGATGGAAGTGAAGGGTGTGTTTCCTGATATTTTTACTTACAATACTATGATATCATTATATTGCAAGAAAAGTATGCATTACAAGGCTTTATCCATCCAGGACAAAATGGAAAGACAAGGAATAAATCTTGATATTGTTAGTTACAATTCTCTTGTTTATGGATTTTGTAGAGAGGGTAGGATGAGAGAAGCCATGAGGATATTTAGTGAAATCAAAGGTGCAATACCCAATCATGTTACATATACTACATTGATTGATGGGTATTGTAAAACAGATGACCTTGAGCAAGCTCTGAAATTGCGTGAGGTGATGGAGGCTAAGGGATTGTACCCTGGAGTTGTTACTTATAATTCAATTTTGCGCAAACTGTGTCAGGATGGTAGAATAAGAGATGCAAATAAACTCTTGACCGAGATGAGTGAAAGAAAAGTTCTGGCTGACAATATAACATGTAACACATTGATTAATGCTTACTGCAAGATAGGAGATATGAAATCTGCATTAAAATTTAAGAACAAGATGTTAGAGGCTGGACTGAAGCCTGACCCATATACCTATAAAGCATTAATTCATGGCTTCTGCAAGAAAAAGGAGCTGGAAAGTGCCAAGCATACATTGTTTGGCATGCTTGATGCTGGACTTTCCCCCAATTACTACACTTTCTCATGGATTGTAGATGTTTACTGCAATAAAGACAATGAAGAGGCAGTTGTTACACTCCCCGATGAGTTTCTTAGAAAAGGTCTTTGTATTGATGTTTCAATATACAGGGCATTAATAAGAAGGCTATGTAAGTTAGAAAGGGTAGAATGTGCTGAAAAGGTATTCAATCTTATGCAAGGGAGGGGTATATCAGGTGATAGTGTTGTGTACACCAGTCTCGCTTATGCTTACTGGAAATCAGGGAATGCAAGGGCTGCATCAAATATGTTAGAAGAAATGACTAGGAGGAGGTTGATGATAACGGGCAAAATCTATAAACGTTTTAGTAATCCTGCTGGTAGTGAAAACCACACTTCATGTTTATTTTGGAATCACATGGTGGAAAGGGGCCTGATGTCAAAAAATACAATGAATAAAATACAGCAGATGGAATTATGA | 1812 | 0.3819 | MLVRWRKRHCFLEIIGMVFVQIPAQFILGVCAIVVKGHWSNLLKLKKASALTSTTIHEVLLQLSLHGYAPSHSLPFFKWVESIPNYKHSLQCSWSMLHILVKHKHFRIAQEMLEKIAHKDFLSSPSVLRTLVGIQDDPEVNSHILSWLVILYTKSKLTDDAIQVFEQMRLYKLNPHLHACTVLLNSLVKDGVTNMVWKIYKQMVQVGVLPNIHIYNVLIHACSKSRDLERAEKLLNEMEVKGVFPDIFTYNTMISLYCKKSMHYKALSIQDKMERQGINLDIVSYNSLVYGFCREGRMREAMRIFSEIKGAIPNHVTYTTLIDGYCKTDDLEQALKLREVMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLTEMSERKVLADNITCNTLINAYCKIGDMKSALKFKNKMLEAGLKPDPYTYKALIHGFCKKKELESAKHTLFGMLDAGLSPNYYTFSWIVDVYCNKDNEEAVVTLPDEFLRKGLCIDVSIYRALIRRLCKLERVECAEKVFNLMQGRGISGDSVVYTSLAYAYWKSGNARAASNMLEEMTRRRLMITGKIYKRFSNPAGSENHTSCLFWNHMVERGLMSKNTMNKIQQMEL | 603 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere07g1841 | 603 | Pfam | PPR repeat family | 313 | 361 | IPR002885 | - | |
| Dere07g1841 | 603 | Pfam | PPR repeat family | 384 | 432 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 349 | 383 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 281 | 311 | IPR002885 | - | |
| Dere07g1841 | 603 | NCBIfam | pentatricopeptide repeat | 386 | 419 | IPR002885 | - | |
| Dere07g1841 | 603 | NCBIfam | pentatricopeptide repeat | 283 | 309 | IPR002885 | - | |
| Dere07g1841 | 603 | NCBIfam | pentatricopeptide repeat | 316 | 349 | IPR002885 | - | |
| Dere07g1841 | 603 | NCBIfam | pentatricopeptide repeat | 492 | 524 | IPR002885 | - | |
| Dere07g1841 | 603 | NCBIfam | pentatricopeptide repeat | 421 | 454 | IPR002885 | - | |
| Dere07g1841 | 603 | NCBIfam | pentatricopeptide repeat | 351 | 384 | IPR002885 | - | |
| Dere07g1841 | 603 | NCBIfam | pentatricopeptide repeat | 248 | 281 | IPR002885 | - | |
| Dere07g1841 | 603 | NCBIfam | pentatricopeptide repeat | 179 | 211 | IPR002885 | - | |
| Dere07g1841 | 603 | NCBIfam | pentatricopeptide repeat | 214 | 247 | IPR002885 | - | |
| Dere07g1841 | 603 | Gene3D | Tetratricopeptide repeat domain | 76 | 267 | IPR011990 | GO:0005515 | |
| Dere07g1841 | 603 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 309 | 573 | - | - | |
| Dere07g1841 | 603 | Gene3D | Tetratricopeptide repeat domain | 341 | 410 | IPR011990 | GO:0005515 | |
| Dere07g1841 | 603 | Gene3D | Tetratricopeptide repeat domain | 268 | 340 | IPR011990 | GO:0005515 | |
| Dere07g1841 | 603 | Gene3D | Tetratricopeptide repeat domain | 411 | 479 | IPR011990 | GO:0005515 | |
| Dere07g1841 | 603 | Pfam | Pentacotripeptide-repeat region of PRORP | 159 | 290 | IPR033443 | - | |
| Dere07g1841 | 603 | Pfam | PPR repeat | 484 | 516 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 246 | 280 | IPR002885 | - | |
| Dere07g1841 | 603 | Pfam | PPR repeat | 526 | 555 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 211 | 245 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 419 | 453 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 176 | 210 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 314 | 348 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 384 | 418 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 489 | 523 | IPR002885 | - | |
| Dere07g1841 | 603 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 524 | 558 | IPR002885 | - | |
| Dere07g1841 | 603 | Gene3D | Tetratricopeptide repeat domain | 480 | 574 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere07g1841 | 138 | 568 | Glycosyltransferase | AT1G05670 | 31.871 | 1.34e-67 | 232 |