Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1831 ATGAATTCTAGGATCTCCGTCGTAACGCCGTTAACGGCGAACCCCATTCCAGGGAATCTCGTAACGGAGGAAATTTTGGCGGTAAAAAAACCTGCCCTCATGACGTGTCGAAATCCCATTGGCGTAGATGTATGTATGATTTCCGAAAGAGGGCCAAATTTAGAGAGAGAAAGAGAAAGAGAGAGGGAAAAGTGCAGCAAAGATAGGGTTCAGAGCTGCTTCAAAAACCCTTGCTTCTTCGATTCGATCCGAGATTACGTCGTCGTTTTCGTGGTTCCTGTACTGGATCCGCCGGGAGCTAAGGGATCAGAGTGTGATCGTTGTTGGTGTGATCTGCGACTATCTGAATCAACTAGGGTTTCCATGAGACCACCTGCTGAGGAGAAGATGGAAGATATTAAGCCTTCAGCTGTCTCAGTCAACAGTTCACAGGTCGATGGCGAACATATTGACCCTGCTGATTCACGATTCACTGAATTCTGCAAGAATGGGTTATCATTGGATGAAGAAAGTTGCAGAAAAGCAATGAAGCTGTTCACAGAAACCAAACACCTTCTACTGACGAATATCTCATCCCTAGGGAATGGAACATATGAAGAAGCAGAACGGTATTGGTTTTCATTTATTTTATACTCTGTCAAGAGGTTGGCTGATAAGAATGTAGACAGTGAGAAGGAAGGGACTGATAGTAATGGGCTTACCTTGTGCCAGATATTGAGAAAGGCAAAGCTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCAATTTTAAGTAATATATATGGCACAGATTGGGAAAACAAGCTTGAGGCAAAGGAGTTGCAGGCCAATTTTCTTCACTTAAGCATTCTTAGCAAATATTATAAACGTGCATTTGGGGAGTTCTTCTTGGCAAACGATGCAAATATTGAAAAGAACTCAGCTGTTTCAACAACTGCTGATTATGCATCTCAATATCATCGTTTTGGATGGTTACTTTTCTTGGCTCTTCGCGTTCATGCATTCAGCCGTTTTAAAGACTTGGTGACTTGCACCAATGGTTTAGTTTCTATATTGGCTATCTTGATTATTCATGTTCCTGCTCGCTTTAGGAATTTTAACATTCATGACTCTTCTCGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACATCATTGCATCACTTTGCAACATCTATGACACTTCAGAAGATGAGGTGAGGAAAACCATGGAGAAAGCCAATAATTTAATTGCAGATATATTGAAGAAGAAGCCTTGTTTGGCATCTGAATGCGAAACTGGAACACTAGAGAATATTGATAAAGATGGTTTGGTCTACTTCAGTGATCTTATGGATGAATCATCTCTGCCATCCTGTTTAAATACCCTAGAAAGAGATTATGATTATGCCATTCGTAACAAGGTTGAACTGGATGAGAGGTTGTTCATCAATGAAGAGGACAGCTTACTAGCTTCAGGAAGCTTGTCTGGAGGTTCAATGTCAGCAAGCGGAGTCAAGAGGAAATTTGATTCATTGGCATCACCTGCCAAGACAATTACAAGTCCACTCTCTCCCCAATGCTCTCCGGCCTCTCATGCTAACGGCATTCCAGGTAGTGCAAATTCAAAGATGGCTGCCACCCCTGTGAGCACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATTTGTCCGCTTCCTTCAAAGCCCTCACCAGAGCTGGAGAGATTTCTGGCATCATGTGATAGGGATGTTACAAGTGATGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTAGGAGAACGATGTTTAACTGGAAGCCCTCAAAGTGCGAACCTCATGGACAACGTTTGGGCAGAACAACGAAGATTGGAAGCCCTGAAGTTATATTATAGGGTCTTGGAAGCAATGTGCAGAGCGGAGGCCCAGATACTGCATGCAACTAATTTAACCTCGTTATTGACTAATGAGAGATTCCATAGATGCATGCTTGCGTGTTCTGCAGAATTAGTCCTAGCAACACATAAGACTGTAACAATGTTGTTTCCTGCAGTGCTGGAGAGGACTGGGATTACAGCTTTTGACCTTAGCAAGGTGATAGAAAGTTTTATAAGACATGAGGATTCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTGTTGGAGAGTATGGTCTGGGAAAAGGGTTCCTCAATGTATAATTCTTTGACGGTTGCTAGACCTTCCCTCTCTTCAGAAATAAATCGTCTTGGATTGTTAGCTGAACCAATGCCATCATTAGATGCAATTGCGACACATATCAATTTCTCTTGTGGGGGGTTGTCCCCTGGGCCTTCCTTGCAGAAGCCTGAGACTTTACCAAGTCAGAATGGGGATACGAGGTCGCCAAAGCGTCTCTGCACAGAATATCGAAGTGTACTTGCGGAACGAAATTCCTTTACATCACCAGTGAAGGATCGGCTTCTGCCCTTCAGCAACCTTAAGTCAAAGCTACCCCCTCCTTTGCAGTCAGCTTTTGCTAGCCCAACAAGACCAAATCCAGGAGGCGGAGGAGAAACCTGTGCAGAAACTGGAATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAGTTGTCTCAGCAGATAAGGGAGAATGTGTACTGTCTTTTCCAACAAATACTAAATCAAAGGACATCTCTCTTCTTCAACCGCCATATTGACCAAATCATTCTCTGTTGTTTCTATGGAATTGCAAAGATTTCACAACTGAACCTAACTTTTAGGGAGATCATTTATAACTATCGAAAGCAACCACAATGCAAGCCACAAGTTTTCCGTGGTGTATTTATTGATTGGTCATTGACACGGCGTAATGGGAGAACAGGACAGGAGCATGTTGATATCATTACATTTTATAATGAAATATTCATTCCCTCTGTGAAAGCTCTGCTGGTTGAGCTTGGTCCTGGGGGAACAACTACAAAAACCAACCGGATACCAGAAGCCAACAATAACAGTGATGGCCATGTAGCTCAATGTCCGGGATCTCCTAAAATCTCTCCTTTTCCTAGCCTTCCTGATATGTCCCCAAAAAAAGTTTCTGCCGTACACAATGTATATGTGTCTCCATTACGATCATCCAAGATGGATGCTCTTATATCACATAACACAAAAAGCTACTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGCGCCCGGAAGGTTAGAGGTCCCCTCAACTTTGACGATGTAGATGTTGGCTTGGTGAGTGACTCCATGGTCGCAAACAGCCTCTATCTTCAGAATGGCAGTTGTGCATCCTCCTCAGGAGCACCGTTGAAGTCTGAGCAGCAAGACTCTTGA 3462 0.4318 MNSRISVVTPLTANPIPGNLVTEEILAVKKPALMTCRNPIGVDVCMISERGPNLEREREREREKCSKDRVQSCFKNPCFFDSIRDYVVVFVVPVLDPPGAKGSECDRCWCDLRLSESTRVSMRPPAEEKMEDIKPSAVSVNSSQVDGEHIDPADSRFTEFCKNGLSLDEESCRKAMKLFTETKHLLLTNISSLGNGTYEEAERYWFSFILYSVKRLADKNVDSEKEGTDSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGPILSNIYGTDWENKLEAKELQANFLHLSILSKYYKRAFGEFFLANDANIEKNSAVSTTADYASQYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIHVPARFRNFNIHDSSRFVKKSSKGVDIIASLCNIYDTSEDEVRKTMEKANNLIADILKKKPCLASECETGTLENIDKDGLVYFSDLMDESSLPSCLNTLERDYDYAIRNKVELDERLFINEEDSLLASGSLSGGSMSASGVKRKFDSLASPAKTITSPLSPQCSPASHANGIPGSANSKMAATPVSTAMTTAKWLRTVICPLPSKPSPELERFLASCDRDVTSDVVRRAQIILQAIFPSSPLGERCLTGSPQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEINRLGLLAEPMPSLDAIATHINFSCGGLSPGPSLQKPETLPSQNGDTRSPKRLCTEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSLTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKTNRIPEANNNSDGHVAQCPGSPKISPFPSLPDMSPKKVSAVHNVYVSPLRSSKMDALISHNTKSYYACVGESTHAYQSPSKDLTAINNRLNGARKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPLKSEQQDS 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1831 1153 CDD CYCLIN_AtRBR_like 871 1002 - -
Dere07g1831 1153 FunFam Retinoblastoma-related protein 1 822 1034 - -
Dere07g1831 1153 MobiDBLite consensus disorder prediction 1011 1028 - -
Dere07g1831 1153 Pfam Domain of unknown function (DUF3452) 227 365 IPR024599 -
Dere07g1831 1153 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 154 1151 IPR028309 GO:0006357|GO:0051726
Dere07g1831 1153 SMART RB_A_2 547 748 IPR002720 GO:0005634|GO:0051726
Dere07g1831 1153 SMART DUF3452_2 216 365 IPR024599 -
Dere07g1831 1153 Pfam Retinoblastoma-associated protein B domain 871 998 IPR002719 GO:0005634|GO:0051726
Dere07g1831 1153 SUPERFAMILY Cyclin-like 555 750 IPR036915 -
Dere07g1831 1153 Gene3D - 550 738 - -
Dere07g1831 1153 SUPERFAMILY Cyclin-like 869 1041 IPR036915 -
Dere07g1831 1153 Gene3D - 832 1022 - -
Dere07g1831 1153 Pfam Retinoblastoma-associated protein A domain 547 748 IPR002720 GO:0005634|GO:0051726
Dere07g1831 1153 Gene3D - 326 484 - -
Dere07g1831 1153 FunFam Retinoblastoma-related protein 1 326 484 - -
Dere07g1831 1153 FunFam Retinoblastoma-related protein 1 550 738 - -
Dere07g1831 1153 Coils Coil 460 480 - -
Dere07g1831 1153 MobiDBLite consensus disorder prediction 121 146 - -
Dere07g1831 1153 MobiDBLite consensus disorder prediction 1011 1030 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1831 153 1153 Core Cell Cycle Gene Families AT3G12280 72.557 0.0 1447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Dere07g1831 RB_A 6.5e-65 CL0065