Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1793 ATGCCTCTACTGTTACACGATTTGATGTTTGGTTATAACACTGTTTATGCTAGTATAGACTTACTGATGCAGATAAGGCCTTGGTGGGTACCATTTATTGGTACATTTGGAAGGACTATTGGTCAACTGATCGCCGTGGTACTGGTTCGTCTCCTTCTCACCCAAGTCATTACGAAATTAATATTGATGGTTGCTGGAGCCCAGGGAATGCCTAAGAGCTGCTATCCCTTTCTCATCTGGTCTGCCATCGACGTTTTACAATCGTTGCTTCGTTCACAGCAGCATCCTTCATCTGCCCGAAAAGAGAATCTGAAGAAGACCACCATCAATTGCAGCGGCCAGATTTCAATGCAACGACTATCTCTGCAAGACCCAATAGTAAAAGCAGCATTAAAAGCACTATCCCCAAACTACTGGACCTACGTTCTCCTCCGCTTCCACACCTGCTTCAGCACCGGGGGCCTTGGCCTCTGCACTTTCATCCTCGCCACCGAGCCCGTCGAACCCACAAAGCGCGGTGCCGCCGCCATGTCCGCATTCTACCTCTTCTCAGCTGGCATTATCCTTCTCTCCGGCATCGCTTATGTCTTCCACGCGTGGCGTGCGCTTTGCATCGCCTCCTCCATTCCCTCCCTCCTCTTCCTCATTCTAGTCCACAGCCTACGTTTCTGCCACAAAAAGAGAGAGCAAGAGTGTAGCGGTGGCCATCAATTTGTTGTGCGCCGTCATATACTATGGACTGAGCTTAAACATAGTGAACCTGGAAACCAACCTTTTCGCGAATGTGGGGCTAAACGCAATGGCAGAGATGCCGGTGATTACCATAACAGCGGTTTTATTGGACAGAGTATGGAGGAAGTGGTTGACGATAGGGACGCTATGGTTCAGAGGATCGTTTTAGATAAAATACTTGCTACGCAACGATTTTGTTTCTCTCCGCAGCAGCGTTGCACCTCCCCCGGTTCTCTCTCGGCTTCAACCATGGCTACTGCGAGGACTGTCAAGGACGTTTCGCCTCACGAGTTCGTCAAGGCCTACTCGGCTCACCTCAAGCGATCCGGCAAGATGGAGCTTCCTGAGTGGACCGATATTGTGAAGACTGCAAGATTTAAAGAACTGGCTCCATATGATTCTGATTGGTACTATGTTAGAGCTGCCTCCATGGCAAGAAAGATCTACTTGAGAGGTGGCCTTGGTGTTGGTGCTTTTCAGAGGATCTATGGTGGCAGCAAAAGGAATGGTAGCCGTCCTCCTCATTTTTGTAAGAGCAGTGGTGCTATTGCCCGTCATATTCTTCAACAGTTACAGAAAATGAACATCATTGAGATTGACACCAATGGTGGCAGGAGAATCACTTCCAGTGGTCAGAGAGATCTTGACCAGGTGGTTGGTCGGATTGTGGTTGCACCTTGA 1413 0.4904 MPLLLHDLMFGYNTVYASIDLLMQIRPWWVPFIGTFGRTIGQLIAVVLVRLLLTQVITKLILMVAGAQGMPKSCYPFLIWSAIDVLQSLLRSQQHPSSARKENLKKTTINCSGQISMQRLSLQDPIVKAALKALSPNYWTYVLLRFHTCFSTGGLGLCTFILATEPVEPTKRGAAAMSAFYLFSAGIILLSGIAYVFHAWRALCIASSIPSLLFLILVHSLRFCHKKREQECSGGHQFVVRRHILWTELKHSEPGNQPFRECGAKRNGRDAGDYHNSGFIGQSMEEVVDDRDAMVQRIVLDKILATQRFCFSPQQRCTSPGSLSASTMATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDSDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQKMNIIEIDTNGGRRITSSGQRDLDQVVGRIVVAP 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1793 470 SUPERFAMILY "Winged helix" DNA-binding domain 333 467 IPR036390 -
Dere07g1793 470 Gene3D MFS general substrate transporter like domains 124 240 IPR036259 -
Dere07g1793 470 SMART Ribosomal_S19e_2 333 469 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dere07g1793 470 PANTHER 40S RIBOSOMAL PROTEIN S19 327 465 IPR001266 GO:0003735|GO:0005840|GO:0006412
Dere07g1793 470 Gene3D - 318 469 IPR036388 -
Dere07g1793 470 ProSitePatterns Ribosomal protein S19e signature. 417 436 IPR018277 GO:0003735|GO:0005840|GO:0006412
Dere07g1793 470 FunFam 40S ribosomal protein S19 329 470 - -
Dere07g1793 470 SUPERFAMILY MFS general substrate transporter 130 222 IPR036259 -
Dere07g1793 470 Pfam Ribosomal protein S19e 333 467 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1793 Dere-ChrDere07 29004910 29013231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1793 328 470 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 83.916 3.60e-88 264