Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1723 ATGAATTTATCCTCAAGGTTTTGTAAGTGCTCAGTGTATCTATTGAAAGCAATGGACAAGGGAAGGCATAAATCTAGGAAGGATGATTCTGACAGGAAGGACATGGATTCAAATAGAAGTCATTGTGAACGAGATCGTGATAGGACTGGAGAAAGAGATAAGGACAGAAATGAAGGGAGGCACAGGGACAGAGAGAAGAGGGATAATGAGTGTTGGCATTATGAGATAGAGAAGAGTAGTGATTGTGGAGACAGATATGGTAAAGATTGGGAGAAGCGCAGAGATATGGGTCACAAAGATAGGACAGGATTTCTGGAAGAAGAAAGAGAAAGAGTTCGAGACAAAAAAAGGGAAAGAGACAGGCAAAATAAGGAAAGAGATAGGAGAGACCGGATAAGGGAGAAAGAAAAAGAGAGGGATAAAGAAAGGGAAAGGAGGGAGGAGAGGGAGAGGGGAAGAGAGAGAGAAAGGGAAACTGATAGGAGGGAGCGTGACAGAGAGAGGGAAATGGAACGGGAAAGAGGGAGGAGAGTATGTCAGAGGGAGAACTATAGGGAAGTTGAGAGTGATGGTAGTGACGATAATTGTAGACAGAGAGATAGGAAGCGCCATAGGAAAGAGGATGGTGATCATAAGGGTAAAGAGAAGGAAAGAAGCACTGGCAAGTTAAGTTGGTCACCTGAGGATGTTGAAGTGAGCCCAAGGAAAATGAATGGTGAAGATGACTCAGATACCAACAAGAAAACATTTGCGATTGAAGAGGAGATAGAGGATGAACACAAGAGGTTGGATGAAGAAATGGAAAAGAGGAGGAGGAGAGTTCAGGAGTGGCAAGAGCAAAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAGTATGTGGAAGTAAGTGTGGATGAACCCAAATCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGACAAATTGGGATGGCAGATACAGCTATGAATGTAAATGATGATGATAAACATGCCAATACTGAGCTTGGGGATTTGATGATGGTTGGTGTTGGTAATGCTACAGTGGCATCTGATTTACAGGATAGAACTGCTGGTACCCTGGCTGATGATGAAATTGATCCATTGGATGCATTCATGAATTCTATGGTGCTTCCTGAAGTTGAAAAGCTCAACAATGCGTTGTCTCCTTCAACTGCTGACAGAAGTGCTGTCTTGAATCCCAATGATAAAGAGGTTGAGCAAAGTCATGGTGGACAGTTGAGGATGGGTACAAATAAATCGATTGGGAGAATAATGCCTGGTGAAGAGTCTGACTCAGATTATGATGACCTTGAAAATGAGGGGGATCCATTTGATGAAGATGATGATGAATTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTGGCTATAGTTGACCACTCAAAGATTGATTATAAACCATTTAAGAAAAATTTTCATATTGAAGTGAAGGAGATCTCCAAGATGACACCTGAAGAAGTTGCAGCATACAGGAAGCTGTTGGAGTTGAAGATACACGGAAAGGATGTGCCGAAGCCTGTTAAATCATGGCACCAGACTGGACTTACTAACAAAATTTTGGAGACAATAAAGAAGCTTAACTATGAAAAGCCAATGTCGATTCAAGCTCAGGCACTGCCTATAATTATGAGTGGTCGAGACTGCATAGGCATTGCTAAAACTGGGTCTGGCAAAACACTAGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTCATAATGGCCCCTACAAGGGAGCTTGTTCAACAAATTTACAGTGATATAAAGAAGTTTGCAAAGGTATTGGGTCTCAAGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATTAGTGAGTTGAAACGTGGAGCTGAGATATTGGTTTGTACTCCAGGTCGGATGATTGACATACTTTGTACCAGTGGTGGAAAAATAACTAATCTTCGTAGAGTCACTTATCTAGTCATGGATGAGGCTGATCGAATGTTTGACATGGGTTTTGAACCCCAAATCACTCGAATTGTTCAAAATATTCGTCCAGACCGTCAAACTGTTCTGTTCTCTGCCACTTTCCCTCGTCAGGTCGAAATTCTAGCTCGTAAAGTTTTGAATAGACCTATTGAAATTCAAGTTGGAGGGAGGAGTGTTGTGAACAAGGACATAACACAGCTAATTGAGGTTCGGCCAGGAAATGAGAGGTTCTTGAGGCTCTTAGAAATATTAGGTGAATGGTATGAAAAAGGAAAGATTTTAATATTTGTACATTCGCAGGAAAAATGTGATGCTTTGTTCAAGGATTTGCTTAGGCATGGTTATCCTTGCCTCTCTCTACATGGGGCTAAGGATCAGACTGATCGTGAATCCACACTTTCTGATTTTAAAAGCAATGTTTGCAATTTGTTGATTGCAACAAGTGTTGCTTCCAGGGGACTTGATGTCAAAGAGCTTGAATTGGTGATCAATTTTGATGTACCAAATCACTATGAAGATTATGTACACCGTGTTGGACGCACAGGCCGAGCTGGACGTAAGGGTTGTGCTATCACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATATGGTGAAAGCCTTGGAGCTTTCTGAGCAAATTGTTCCTAATGACCTGAAAGCTCTTGCTTATGGCTTTATGGCAAAAGTGAATCAAGGAATTGAGCAAGCTCATGGGAGTGGTTATGGAGGCAGTGGTTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCACAAGCCAAAGAGTATGGGTTTGAAGAAGACAAATCAGATTCTGAAGATGATGAAGAAGGTATTAGGAAGGCAGGAGGTGACATTTCACAGCATTCTGCTGTTGCTCAGATTCTTGTTGCTGCCACGAAAGTGAATTCACCTGCAGTCCCTACTCATCTCTCCACTGCACAGCTGATGTCAAATGGTGGACAGCCAGTTTCTTTGCCATCTGTTCTTGGTCTCCAGGCTGCAGCAACGGGGCTGCCCCTTGTACCAAATGATGGGGCAGCTCGAGCAGCATTGGCTGCTATAAACTTGCAGCACAAGTTAGCAAAGATTGCTGGTACAATCCCTGAGCATTATGAAGCAGAGTTGGAGATAAATGATTTCCCCCAGAATGCTCGGTGGAAAGTCACACACAAGGAAACATTGGGCCCAATTGCTGATTGGACTGGAGCTGCTATCACTACTAGAGGGCAGTACTTCCAATCTGGTAAGGTCCCAGGACCTGGAGAACGCAAACTTTACTTGTTCATTCAAGGTCCAAGTGAGCAGTCTGTTAAAAGAGCTAAAGCAGAATTGAAGCGTGTTTTAGAAGACATCACAAATCGGGCTTTGCAACTTCCTGGTGGAGCTCAACCAGGAAAATACTCAATTGTGTAA 3465 0.4286 MNLSSRFCKCSVYLLKAMDKGRHKSRKDDSDRKDMDSNRSHCERDRDRTGERDKDRNEGRHRDREKRDNECWHYEIEKSSDCGDRYGKDWEKRRDMGHKDRTGFLEEERERVRDKKRERDRQNKERDRRDRIREKEKERDKERERREERERGRERERETDRRERDREREMERERGRRVCQRENYREVESDGSDDNCRQRDRKRHRKEDGDHKGKEKERSTGKLSWSPEDVEVSPRKMNGEDDSDTNKKTFAIEEEIEDEHKRLDEEMEKRRRRVQEWQEQRRKKEEAEREKYVEVSVDEPKSGKTWTLEGESDDEEGQIGMADTAMNVNDDDKHANTELGDLMMVGVGNATVASDLQDRTAGTLADDEIDPLDAFMNSMVLPEVEKLNNALSPSTADRSAVLNPNDKEVEQSHGGQLRMGTNKSIGRIMPGEESDSDYDDLENEGDPFDEDDDEFMKRVKKTKAEKLAIVDHSKIDYKPFKKNFHIEVKEISKMTPEEVAAYRKLLELKIHGKDVPKPVKSWHQTGLTNKILETIKKLNYEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIYSDIKKFAKVLGLKCVPVYGGSGVAQQISELKRGAEILVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNRPIEIQVGGRSVVNKDITQLIEVRPGNERFLRLLEILGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTLSDFKSNVCNLLIATSVASRGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDMVKALELSEQIVPNDLKALAYGFMAKVNQGIEQAHGSGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDDEEGIRKAGGDISQHSAVAQILVAATKVNSPAVPTHLSTAQLMSNGGQPVSLPSVLGLQAAATGLPLVPNDGAARAALAAINLQHKLAKIAGTIPEHYEAELEINDFPQNARWKVTHKETLGPIADWTGAAITTRGQYFQSGKVPGPGERKLYLFIQGPSEQSVKRAKAELKRVLEDITNRALQLPGGAQPGKYSIV 1154
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1723 1154 MobiDBLite consensus disorder prediction 80 253 - -
Dere07g1723 1154 Coils Coil 253 287 - -
Dere07g1723 1154 MobiDBLite consensus disorder prediction 267 316 - -
Dere07g1723 1154 MobiDBLite consensus disorder prediction 267 311 - -
Dere07g1723 1154 Pfam DEAD/DEAH box helicase 545 716 IPR011545 GO:0003676|GO:0005524
Dere07g1723 1154 Coils Coil 1118 1138 - -
Dere07g1723 1154 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 520 548 IPR014014 GO:0003724
Dere07g1723 1154 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 757 901 IPR001650 -
Dere07g1723 1154 MobiDBLite consensus disorder prediction 19 67 - -
Dere07g1723 1154 CDD SF2_C_DEAD 741 871 - -
Dere07g1723 1154 Gene3D - 472 729 IPR027417 -
Dere07g1723 1154 SMART ultradead3 539 744 IPR014001 -
Dere07g1723 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 878 IPR027417 -
Dere07g1723 1154 Gene3D - 730 904 IPR027417 -
Dere07g1723 1154 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 551 729 IPR014001 -
Dere07g1723 1154 MobiDBLite consensus disorder prediction 409 452 - -
Dere07g1723 1154 Coils Coil 105 125 - -
Dere07g1723 1154 MobiDBLite consensus disorder prediction 435 451 - -
Dere07g1723 1154 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 675 683 IPR000629 -
Dere07g1723 1154 Coils Coil 132 152 - -
Dere07g1723 1154 FunFam probable ATP-dependent RNA helicase DDX17 482 732 - -
Dere07g1723 1154 PANTHER RNA HELICASE 466 942 - -
Dere07g1723 1154 CDD KH-I_AtRH42_like 1051 1153 - -
Dere07g1723 1154 CDD DEADc_DDX46 509 730 - -
Dere07g1723 1154 MobiDBLite consensus disorder prediction 80 224 - -
Dere07g1723 1154 Pfam Helicase conserved C-terminal domain 754 862 IPR001650 -
Dere07g1723 1154 SMART helicmild6 781 862 IPR001650 -
Dere07g1723 1154 MobiDBLite consensus disorder prediction 233 253 - -
Dere07g1723 1154 MobiDBLite consensus disorder prediction 941 966 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere07g1723 Dere-ChrDere07 27294205 27297669 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1723 507 882 Eukaryotic Initiation Factors Gene Family AT3G19760 31.053 2.59e-56 199