Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere07g1723 | ATGAATTTATCCTCAAGGTTTTGTAAGTGCTCAGTGTATCTATTGAAAGCAATGGACAAGGGAAGGCATAAATCTAGGAAGGATGATTCTGACAGGAAGGACATGGATTCAAATAGAAGTCATTGTGAACGAGATCGTGATAGGACTGGAGAAAGAGATAAGGACAGAAATGAAGGGAGGCACAGGGACAGAGAGAAGAGGGATAATGAGTGTTGGCATTATGAGATAGAGAAGAGTAGTGATTGTGGAGACAGATATGGTAAAGATTGGGAGAAGCGCAGAGATATGGGTCACAAAGATAGGACAGGATTTCTGGAAGAAGAAAGAGAAAGAGTTCGAGACAAAAAAAGGGAAAGAGACAGGCAAAATAAGGAAAGAGATAGGAGAGACCGGATAAGGGAGAAAGAAAAAGAGAGGGATAAAGAAAGGGAAAGGAGGGAGGAGAGGGAGAGGGGAAGAGAGAGAGAAAGGGAAACTGATAGGAGGGAGCGTGACAGAGAGAGGGAAATGGAACGGGAAAGAGGGAGGAGAGTATGTCAGAGGGAGAACTATAGGGAAGTTGAGAGTGATGGTAGTGACGATAATTGTAGACAGAGAGATAGGAAGCGCCATAGGAAAGAGGATGGTGATCATAAGGGTAAAGAGAAGGAAAGAAGCACTGGCAAGTTAAGTTGGTCACCTGAGGATGTTGAAGTGAGCCCAAGGAAAATGAATGGTGAAGATGACTCAGATACCAACAAGAAAACATTTGCGATTGAAGAGGAGATAGAGGATGAACACAAGAGGTTGGATGAAGAAATGGAAAAGAGGAGGAGGAGAGTTCAGGAGTGGCAAGAGCAAAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAGTATGTGGAAGTAAGTGTGGATGAACCCAAATCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGACAAATTGGGATGGCAGATACAGCTATGAATGTAAATGATGATGATAAACATGCCAATACTGAGCTTGGGGATTTGATGATGGTTGGTGTTGGTAATGCTACAGTGGCATCTGATTTACAGGATAGAACTGCTGGTACCCTGGCTGATGATGAAATTGATCCATTGGATGCATTCATGAATTCTATGGTGCTTCCTGAAGTTGAAAAGCTCAACAATGCGTTGTCTCCTTCAACTGCTGACAGAAGTGCTGTCTTGAATCCCAATGATAAAGAGGTTGAGCAAAGTCATGGTGGACAGTTGAGGATGGGTACAAATAAATCGATTGGGAGAATAATGCCTGGTGAAGAGTCTGACTCAGATTATGATGACCTTGAAAATGAGGGGGATCCATTTGATGAAGATGATGATGAATTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTGGCTATAGTTGACCACTCAAAGATTGATTATAAACCATTTAAGAAAAATTTTCATATTGAAGTGAAGGAGATCTCCAAGATGACACCTGAAGAAGTTGCAGCATACAGGAAGCTGTTGGAGTTGAAGATACACGGAAAGGATGTGCCGAAGCCTGTTAAATCATGGCACCAGACTGGACTTACTAACAAAATTTTGGAGACAATAAAGAAGCTTAACTATGAAAAGCCAATGTCGATTCAAGCTCAGGCACTGCCTATAATTATGAGTGGTCGAGACTGCATAGGCATTGCTAAAACTGGGTCTGGCAAAACACTAGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTCATAATGGCCCCTACAAGGGAGCTTGTTCAACAAATTTACAGTGATATAAAGAAGTTTGCAAAGGTATTGGGTCTCAAGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATTAGTGAGTTGAAACGTGGAGCTGAGATATTGGTTTGTACTCCAGGTCGGATGATTGACATACTTTGTACCAGTGGTGGAAAAATAACTAATCTTCGTAGAGTCACTTATCTAGTCATGGATGAGGCTGATCGAATGTTTGACATGGGTTTTGAACCCCAAATCACTCGAATTGTTCAAAATATTCGTCCAGACCGTCAAACTGTTCTGTTCTCTGCCACTTTCCCTCGTCAGGTCGAAATTCTAGCTCGTAAAGTTTTGAATAGACCTATTGAAATTCAAGTTGGAGGGAGGAGTGTTGTGAACAAGGACATAACACAGCTAATTGAGGTTCGGCCAGGAAATGAGAGGTTCTTGAGGCTCTTAGAAATATTAGGTGAATGGTATGAAAAAGGAAAGATTTTAATATTTGTACATTCGCAGGAAAAATGTGATGCTTTGTTCAAGGATTTGCTTAGGCATGGTTATCCTTGCCTCTCTCTACATGGGGCTAAGGATCAGACTGATCGTGAATCCACACTTTCTGATTTTAAAAGCAATGTTTGCAATTTGTTGATTGCAACAAGTGTTGCTTCCAGGGGACTTGATGTCAAAGAGCTTGAATTGGTGATCAATTTTGATGTACCAAATCACTATGAAGATTATGTACACCGTGTTGGACGCACAGGCCGAGCTGGACGTAAGGGTTGTGCTATCACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATATGGTGAAAGCCTTGGAGCTTTCTGAGCAAATTGTTCCTAATGACCTGAAAGCTCTTGCTTATGGCTTTATGGCAAAAGTGAATCAAGGAATTGAGCAAGCTCATGGGAGTGGTTATGGAGGCAGTGGTTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCACAAGCCAAAGAGTATGGGTTTGAAGAAGACAAATCAGATTCTGAAGATGATGAAGAAGGTATTAGGAAGGCAGGAGGTGACATTTCACAGCATTCTGCTGTTGCTCAGATTCTTGTTGCTGCCACGAAAGTGAATTCACCTGCAGTCCCTACTCATCTCTCCACTGCACAGCTGATGTCAAATGGTGGACAGCCAGTTTCTTTGCCATCTGTTCTTGGTCTCCAGGCTGCAGCAACGGGGCTGCCCCTTGTACCAAATGATGGGGCAGCTCGAGCAGCATTGGCTGCTATAAACTTGCAGCACAAGTTAGCAAAGATTGCTGGTACAATCCCTGAGCATTATGAAGCAGAGTTGGAGATAAATGATTTCCCCCAGAATGCTCGGTGGAAAGTCACACACAAGGAAACATTGGGCCCAATTGCTGATTGGACTGGAGCTGCTATCACTACTAGAGGGCAGTACTTCCAATCTGGTAAGGTCCCAGGACCTGGAGAACGCAAACTTTACTTGTTCATTCAAGGTCCAAGTGAGCAGTCTGTTAAAAGAGCTAAAGCAGAATTGAAGCGTGTTTTAGAAGACATCACAAATCGGGCTTTGCAACTTCCTGGTGGAGCTCAACCAGGAAAATACTCAATTGTGTAA | 3465 | 0.4286 | MNLSSRFCKCSVYLLKAMDKGRHKSRKDDSDRKDMDSNRSHCERDRDRTGERDKDRNEGRHRDREKRDNECWHYEIEKSSDCGDRYGKDWEKRRDMGHKDRTGFLEEERERVRDKKRERDRQNKERDRRDRIREKEKERDKERERREERERGRERERETDRRERDREREMERERGRRVCQRENYREVESDGSDDNCRQRDRKRHRKEDGDHKGKEKERSTGKLSWSPEDVEVSPRKMNGEDDSDTNKKTFAIEEEIEDEHKRLDEEMEKRRRRVQEWQEQRRKKEEAEREKYVEVSVDEPKSGKTWTLEGESDDEEGQIGMADTAMNVNDDDKHANTELGDLMMVGVGNATVASDLQDRTAGTLADDEIDPLDAFMNSMVLPEVEKLNNALSPSTADRSAVLNPNDKEVEQSHGGQLRMGTNKSIGRIMPGEESDSDYDDLENEGDPFDEDDDEFMKRVKKTKAEKLAIVDHSKIDYKPFKKNFHIEVKEISKMTPEEVAAYRKLLELKIHGKDVPKPVKSWHQTGLTNKILETIKKLNYEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIYSDIKKFAKVLGLKCVPVYGGSGVAQQISELKRGAEILVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNRPIEIQVGGRSVVNKDITQLIEVRPGNERFLRLLEILGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTLSDFKSNVCNLLIATSVASRGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDMVKALELSEQIVPNDLKALAYGFMAKVNQGIEQAHGSGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDDEEGIRKAGGDISQHSAVAQILVAATKVNSPAVPTHLSTAQLMSNGGQPVSLPSVLGLQAAATGLPLVPNDGAARAALAAINLQHKLAKIAGTIPEHYEAELEINDFPQNARWKVTHKETLGPIADWTGAAITTRGQYFQSGKVPGPGERKLYLFIQGPSEQSVKRAKAELKRVLEDITNRALQLPGGAQPGKYSIV | 1154 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere07g1723 | 1154 | MobiDBLite | consensus disorder prediction | 80 | 253 | - | - | |
Dere07g1723 | 1154 | Coils | Coil | 253 | 287 | - | - | |
Dere07g1723 | 1154 | MobiDBLite | consensus disorder prediction | 267 | 316 | - | - | |
Dere07g1723 | 1154 | MobiDBLite | consensus disorder prediction | 267 | 311 | - | - | |
Dere07g1723 | 1154 | Pfam | DEAD/DEAH box helicase | 545 | 716 | IPR011545 | GO:0003676|GO:0005524 | |
Dere07g1723 | 1154 | Coils | Coil | 1118 | 1138 | - | - | |
Dere07g1723 | 1154 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 520 | 548 | IPR014014 | GO:0003724 | |
Dere07g1723 | 1154 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 757 | 901 | IPR001650 | - | |
Dere07g1723 | 1154 | MobiDBLite | consensus disorder prediction | 19 | 67 | - | - | |
Dere07g1723 | 1154 | CDD | SF2_C_DEAD | 741 | 871 | - | - | |
Dere07g1723 | 1154 | Gene3D | - | 472 | 729 | IPR027417 | - | |
Dere07g1723 | 1154 | SMART | ultradead3 | 539 | 744 | IPR014001 | - | |
Dere07g1723 | 1154 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 592 | 878 | IPR027417 | - | |
Dere07g1723 | 1154 | Gene3D | - | 730 | 904 | IPR027417 | - | |
Dere07g1723 | 1154 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 551 | 729 | IPR014001 | - | |
Dere07g1723 | 1154 | MobiDBLite | consensus disorder prediction | 409 | 452 | - | - | |
Dere07g1723 | 1154 | Coils | Coil | 105 | 125 | - | - | |
Dere07g1723 | 1154 | MobiDBLite | consensus disorder prediction | 435 | 451 | - | - | |
Dere07g1723 | 1154 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 675 | 683 | IPR000629 | - | |
Dere07g1723 | 1154 | Coils | Coil | 132 | 152 | - | - | |
Dere07g1723 | 1154 | FunFam | probable ATP-dependent RNA helicase DDX17 | 482 | 732 | - | - | |
Dere07g1723 | 1154 | PANTHER | RNA HELICASE | 466 | 942 | - | - | |
Dere07g1723 | 1154 | CDD | KH-I_AtRH42_like | 1051 | 1153 | - | - | |
Dere07g1723 | 1154 | CDD | DEADc_DDX46 | 509 | 730 | - | - | |
Dere07g1723 | 1154 | MobiDBLite | consensus disorder prediction | 80 | 224 | - | - | |
Dere07g1723 | 1154 | Pfam | Helicase conserved C-terminal domain | 754 | 862 | IPR001650 | - | |
Dere07g1723 | 1154 | SMART | helicmild6 | 781 | 862 | IPR001650 | - | |
Dere07g1723 | 1154 | MobiDBLite | consensus disorder prediction | 233 | 253 | - | - | |
Dere07g1723 | 1154 | MobiDBLite | consensus disorder prediction | 941 | 966 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere07g1723 | Dere-ChrDere07 | 27294205 | 27297669 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere07g1723 | 507 | 882 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.053 | 2.59e-56 | 199 |