Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1713 ATGGGGAGGGGGAAGATAGAGATAAAGAGGATAGAGAACACAACGAATCGGCAAGTGACATTCTGCAAGCGAAGGAATGGACTTCTGAAGAAAGCATATGAGCTCTCTGTGCTGTGTGATGCCGAAGTCTCTCTCGTCGTCTTCTCAAGTCGTGGTCGCCTCTACGAGTACTCCAACAACAACATAAGGTCAACTATAGAGAGATACAAAAAGGCATGTTCAGATCATTCAGGTACCAGTTCAACTACTGAAATCAATGCCCAGTATTATCAACAAGAATCTGCGAAGCTACGACAGCAGATACAAATGCTACAAAATTCTAACAGGCATTTGATGGGTGATGCCTTAAGCACACTGACCGTGAAGGAGCTGAAGCAGCTGGAGAATAGACTTGAAAGAGGAATCACTCGAATCAGGTCTAAGAAGCACGAGATGCTACTGGCCGAAATTGAATACCTGCAAAAGAGGGAGATTGAACTTGAGAATGAAAACCTTTGTATTCGGACTAAGATGGCAGAAGTTGAGAGGGTTCAAGAAGCAAACATGGTTTCTGGGGCAGAGCTGAATGCCATACACGCATTAGCTTCTCGCAATTTCTTCACTTCCAACATGGTCGACGCTGCATCTCCCTATCCTCAATCTGACAGGAAGATTCTTCACCTCGGACAAGTTTATGAAATTGATAGTGAGGCCTGGCCAAATGATTTTAACGCTGCTACTGATCATAATACAGGGAAAGTTGAAGCTACTGTTCAGCTATATAATATGGACCAAAGCTTTGAACGTGCAGATAGTGGCAATCACATGATGGTCATAGAAAACTCTTCTTTTACGATTTCACCCTTCTTTGTTCATAATGCAGGCATTAATATCTTACTTCCTTCGGACTCGTTGTTAAATATAAATGCCAACCTTTTTACTCATGACTTAAATGAAACCGAGCTACATCTGGCTGAGCCTTACCTCATATTTGTTCCATCTAATGTTAATCATATATCTTGGGCTCCTTTTAATGGTCCTTTTACCAAAATATTGTACCAGACGTGGCCTTTTTCAATTGGGCTTTATGTACAAAGACAAGATGTTGGGCTTTCCTTTTCTGGTTTTACAGATGAGGATAAATCTTTTGATTATGATCTCTTATGTTTGTCAAATACAAGTGAGATGCAGAATCGAAGTTTGAATGTTAAGGATATAATTCCACAGTATTTATACTCTGGAAGCTCTTTACATATCAAGAAGCGTAAAAGATAA 1254 0.4043 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLVVFSSRGRLYEYSNNNIRSTIERYKKACSDHSGTSSTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENLCIRTKMAEVERVQEANMVSGAELNAIHALASRNFFTSNMVDAASPYPQSDRKILHLGQVYEIDSEAWPNDFNAATDHNTGKVEATVQLYNMDQSFERADSGNHMMVIENSSFTISPFFVHNAGINILLPSDSLLNINANLFTHDLNETELHLAEPYLIFVPSNVNHISWAPFNGPFTKILYQTWPFSIGLYVQRQDVGLSFSGFTDEDKSFDYDLLCLSNTSEMQNRSLNVKDIIPQYLYSGSSLHIKKRKR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1713 417 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Dere07g1713 417 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Dere07g1713 417 Coils Coil 124 163 - -
Dere07g1713 417 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere07g1713 417 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere07g1713 417 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere07g1713 417 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere07g1713 417 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere07g1713 417 Coils Coil 87 107 - -
Dere07g1713 417 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Dere07g1713 417 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Dere07g1713 417 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Dere07g1713 417 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere07g1713 417 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere07g1713 417 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere07g1713 417 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1713 Dere-ChrDere07 27138401 27150472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1713 1 222 MADS-box Gene Family AT4G09960 73.913 1.64e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere07g1713 K-box 9.8e-26 No_clan