Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1680 ATGGTGTCGGTTTGCTATTGTGGTTGCTGCTGTTGCAGTGGCTCTGTTCGCCCCTGTTCACGCTGTTTGGAGCAGAGGAAGGCGTTTACAGCTTCAGCTCGGTCTGCTTCTCTTCTTCCTTCCACATTCTTAGTTCCAGCTCTTGCTTTCTCAGTTTTCTGCTCCACTCCTTCGGTTCCTGCTTCGCGTGATTGTTTTCTGGTTTTCCATTTCTTGAAAGACAATCTTAGTGCAAAAATTCAAACCATGAAGGCAAGCAAGGGGAAGAAGGCAGTAAAGAACTCAAAGGAAGCACTAAAGCCAGTTGATGATCGAAAAGTTGGTAAGCGAAGGGCTACATCAAAACCTGACAAGAGTAGCACACGGAAGGCCAACAAAGAGAGGAATGCCGAGAAAGATCCCAACAAATCGAAAAGACCGCCTAGTGCTTTTCTCGTCTTCCTCGAGGAGTTCAGAAAGACCTTCAAGGCAGAAAATCCTAACGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCATGACTAGTGCTGAAAAAGCACCATATGAAGCCAAAGCTGCGTTTGTTCAGCTGCTATGA 594 0.4646 MVSVCYCGCCCCSGSVRPCSRCLEQRKAFTASARSASLLPSTFLVPALAFSVFCSTPSVPASRDCFLVFHFLKDNLSAKIQTMKASKGKKAVKNSKEALKPVDDRKVGKRRATSKPDKSSTRKANKERNAEKDPNKSKRPPSAFLVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSMTSAEKAPYEAKAAFVQLL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1680 197 SUPERFAMILY HMG-box 125 192 IPR036910 -
Dere07g1680 197 CDD HMG-box_AtHMGB1-like 138 192 - -
Dere07g1680 197 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 86 192 IPR031061 -
Dere07g1680 197 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 137 197 IPR009071 -
Dere07g1680 197 MobiDBLite consensus disorder prediction 90 138 - -
Dere07g1680 197 Gene3D High mobility group box domain 120 195 IPR036910 -
Dere07g1680 197 MobiDBLite consensus disorder prediction 85 140 - -
Dere07g1680 197 Pfam HMG (high mobility group) box 138 192 IPR009071 -
Dere07g1680 197 SMART hmgende2 136 195 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1680 Dere-ChrDere07 26111362 26111955 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere07g1680 HMG_box 2.8e-18 CL0114