Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1677 ATGGCACAAGGCATCAAGTGGCTACAAGACAAACCCCTCACAAAGTTCAAGGATGCCCAGTGGCTTATCATTCAAAAGGCTGAGGAAGAGAAGCTTCTTCATGTTAAAATAAGGTTGCCTGATCATGTCCTAAGTGAGTTGACAATGACATGCAACGATGTTTATCTCAACTACAGTCAAGGAACATCTACTCAGGTTTGGAATGAACAGCGTAAGTCAATCCTACAGGATGCTATTTCAAATTTTCTTCTACCATCTAGGGAGAAGGAAGCACGACAATTGTTAACTGCTAAGGCAAAAAAACTGGTTATTAATGGAGTACGGGAAGGAATTATGGAACAAAGTCTCTGAGCTGCTAACGCATCCTGTATACGGTTGAGAGATGACGTTAATGAGATTATTTCAACGATGTTGGAGGAAAATCTTCAAGATGTCAGTCAAGAGATGAAAGGAATAACTACAGTTTTAAGGGATGAAAGCCTGCCTCGCCTATACAAAGATTCAGAAATTTCTGTGCACCAGCTTCACAGACAACATGGCATTGTGAGGAGGGCACTACTTAAGAATTCTAATGTAGAAGAAAGTATGCTACCAAACACATTGCCTACAAGGGTGGTAGATGATAGGTCTGTTCCATATTTAGAGGCAGAGTCTGACCAGCATTCTGAACCATTGAATGTTAATCATGCTGATGTTCCTTCAGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTGACTCGGTTTGATGGATATGAGGATCTGCTTAAGAAATTAGAGCAGATGTTTGGCATCAGGGGTGAGCTTTGTGGATCCAGTAAAACATGGCTGGTTGTCTACACCGATAATGAAGATGATGTGATGATGGTTGGAGATATTCCATGGGATGAGTTCTGTGGTGCTGTGAGGAAAATTTTCATCTACACAGTAGAAGAGGTGAAGAAGCTCTCGCCCAAAATACTACTTTCCATTGGTGAAGCAGCTAAAACAAGCAAGCTGGATTCGGAAGCAGCATGA 1023 0.4194 MAQGIKWLQDKPLTKFKDAQWLIIQKAEEEKLLHVKIRLPDHVLSELTMTCNDVYLNYSQGTSTQVWNEQRKSILQDAISNFLLPSREKEARQLLTAKAKKLVINGVREGIMEQSLXAANASCIRLRDDVNEIISTMLEENLQDVSQEMKGITTVLRDESLPRLYKDSEISVHQLHRQHGIVRRALLKNSNVEESMLPNTLPTRVVDDRSVPYLEAESDQHSEPLNVNHADVPSVHMQGMAVGRAVDLTRFDGYEDLLKKLEQMFGIRGELCGSSKTWLVVYTDNEDDVMMVGDIPWDEFCGAVRKIFIYTVEEVKKLSPKILLSIGEAAKTSKLDSEAA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1677 340 SUPERFAMILY CAD & PB1 domains 235 307 - -
Dere07g1677 340 Pfam AUX/IAA family 227 320 IPR033389 -
Dere07g1677 340 SUPERFAMILY Tex N-terminal region-like 11 105 - -
Dere07g1677 340 Gene3D - 1 158 IPR023323 -
Dere07g1677 340 Gene3D - 228 319 - -
Dere07g1677 340 ProSiteProfiles PB1 domain profile. 230 323 IPR000270 GO:0005515
Dere07g1677 340 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 4 109 IPR017072 GO:0032968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1677 Dere-ChrDere07 26108954 26110451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1677 186 326 B3 DNA Binding Superfamily AT1G59750 53.293 4.57e-49 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere07g1677 AUX_IAA 5.1e-08 CL0072