Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1667 ATGGAGAAGGAAGCACGACAATTGTTAACTGCTAAGGCAAAAAACTGGTTATTAATGGAGTACGGGAAGGAATTATGGAACAGAGTCTCTGTGGCACCATGTCAATACAGGAATAATGCTACTACACAAGAGAAGGGTGCTGCATCCAAAGTCATGGCTTTTTGTTGGGGAACTGGAAAGCTCGGTACCACATTTGTGATGTTGGACTCTAAAGGGGAATTGGTTGATGTGATGCATGCGGGGTCACATACTCTGCGATCACAGAATATAAATGATCAACAGCGCAGGAAAAACGATCAACAACGTGTTCTTAAGTTCCTGAGAAATCATCAACCAGACGTAATTGTTATAGGAGCTGCTAACGCATCCTGTATACGGTTGAGAGATGACGTTAATGAGATTATTTCAATGATGTTGGAGGAAAATCTTCAAGATGTCAGTCAAGAGATGAAAGGAATAACTATAGTTTTAGGGGATGAAAGCCTACCTCGCCTATACGAAGATTCAGAAATTTCTGTGCACCAGCTTCACAGACAACATGGCATTGTGAGAAGGGCAGTGGCTCTTGGACATTACCTTCTAAACCCATTAGCAATGCTACTTAAGAATTCTAATGTAGAAGAAAGTATGCTACCAAACACATTGCCTACAAGGGTGGGAGATGATAGGTCTGTTCCATATTTAGAGGCAGAGTCTGACCAGCATTCTGAACCATTGAATGTTAATCGTGCTGATGTTCCTTCAGTAAGTGGAATGGCTGTTGGGAGGGCTGTGGATTTGACTCGGTTTGATGGATATGAGGATCTGCTTAAGAAATTAGAGCAGATGTTTGGCATCAAGGGTGAGCTTTGTGGATCCAGTAAAACATGGCAGGTTGTCTACACTGATAATGAAGAAGATGTGATGATGGTTGGAGATATTCCATGGGATGAGTTCTGTGGTGCTGTGAGGAAAATTTTCATCTACACAGTAGAGGAGGTGAAGAAGCTCTCGCCCAAAATACTGCTTTCCACTGGTGAAGCAGCTAAAACAAGCAAGCTGGATTCGAAAGCAGCATGA 1059 0.4249 MEKEARQLLTAKAKNWLLMEYGKELWNRVSVAPCQYRNNATTQEKGAASKVMAFCWGTGKLGTTFVMLDSKGELVDVMHAGSHTLRSQNINDQQRRKNDQQRVLKFLRNHQPDVIVIGAANASCIRLRDDVNEIISMMLEENLQDVSQEMKGITIVLGDESLPRLYEDSEISVHQLHRQHGIVRRAVALGHYLLNPLAMLLKNSNVEESMLPNTLPTRVGDDRSVPYLEAESDQHSEPLNVNRADVPSVSGMAVGRAVDLTRFDGYEDLLKKLEQMFGIKGELCGSSKTWQVVYTDNEEDVMMVGDIPWDEFCGAVRKIFIYTVEEVKKLSPKILLSTGEAAKTSKLDSKAA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1667 352 SMART rnase_8s 49 167 IPR006641 GO:0006139
Dere07g1667 352 ProSiteProfiles PB1 domain profile. 241 335 IPR000270 GO:0005515
Dere07g1667 352 Pfam Holliday-junction resolvase-like of SPT6 46 197 IPR028231 -
Dere07g1667 352 SUPERFAMILY Ribonuclease H-like 50 202 IPR012337 -
Dere07g1667 352 SUPERFAMILY CAD & PB1 domains 253 319 - -
Dere07g1667 352 Pfam AUX/IAA family 287 332 IPR033389 -
Dere07g1667 352 Coils Coil 90 110 - -
Dere07g1667 352 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 1 208 IPR017072 GO:0032968
Dere07g1667 352 Gene3D - 45 210 IPR037027 GO:0006139
Dere07g1667 352 Gene3D - 246 331 - -
Dere07g1667 352 FunFam Transcription elongation factor spt6 39 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1667 Dere-ChrDere07 25835398 25836729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1667 200 337 B3 DNA Binding Superfamily AT1G59750 52.410 7.98e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere07g1667 YqgF 4.7e-15 CL0580