Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1652 ATGTCATTCCGGAGCATTGTTCGTGATGTAAGGGATAGTTTTGGGAGCTTATCTAGATGGAGTTTTGATGTTAGGCCGACTGGTCATCACCGAGGAAAGTCTCATGGTTCTTTTCAAGATTTGCATGATCAGCCTTTAGAGAGTGATAGCACATGGCCTGCTCGAAAGCATGTTGTTGCACGCGCTGTAGTTTGCCGGTCTTGGAGGAACATGTGCAAAGAAATTGTGAAGAGCTCAGAATTCTGTGGTAAGCTTACTTTCCCTGTGTCCCTGAAGCAGCCAGGGCTAAGAGATGGAATGATTCAATGTTTTATCAAAAGAGATAAGTTTAACTTAACATACCACCTATTCCTTTGTCTTAGCCTTGTTTTGTTAGTTGAAAATGGAAATTTCCTCCTTTCTACTAAGAGGACAAGAAGAATAACTTACACAGAGTATGTTATTTCCATGGATGCTAACAACATCTCAAGATCAACTAACACTTACATTGGAAAGCTGAGATCAAACTTTCTTGGTACAAAGTTCATAATATATGATACACATCCTCCATTCACTTCTGCCTATATACCCCCTCCTGGGACTGGGAGGACAAGCCGGAGGTTTTACTCCAAAAAGGTTTCGCCAAAGGTTCCATCTGCTTCTGCGCTTGATACTGATGGCACAGATGAGGAAGGCAAGATAAGACCCTTGATCCTCAAAAACAAACCTCTAAGATGGCATGAACAGTTGCAATGCTGGTGCCTCAACTTCCAGGGATGGGTAACAGTTGCCTCTGTTAAAAACTATCAGTTGATTGCTGCCTCCCAACCAGCTACTGGCACACCCACACCATCTTGA 837 0.4289 MSFRSIVRDVRDSFGSLSRWSFDVRPTGHHRGKSHGSFQDLHDQPLESDSTWPARKHVVARAVVCRSWRNMCKEIVKSSEFCGKLTFPVSLKQPGLRDGMIQCFIKRDKFNLTYHLFLCLSLVLLVENGNFLLSTKRTRRITYTEYVISMDANNISRSTNTYIGKLRSNFLGTKFIIYDTHPPFTSAYIPPPGTGRTSRRFYSKKVSPKVPSASALDTDGTDEEGKIRPLILKNKPLRWHEQLQCWCLNFQGWVTVASVKNYQLIAASQPATGTPTPS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1652 278 Gene3D Tubby Protein; Chain A 87 214 IPR025659 -
Dere07g1652 278 Pfam Tub family 227 267 IPR000007 -
Dere07g1652 278 Pfam Tub family 91 210 IPR000007 -
Dere07g1652 278 PANTHER TUBBY-RELATED 46 268 - -
Dere07g1652 278 SUPERFAMILY Tubby C-terminal domain-like 80 270 IPR025659 -
Dere07g1652 278 PRINTS Tubby superfamily signature 250 266 IPR000007 -
Dere07g1652 278 PRINTS Tubby superfamily signature 232 249 IPR000007 -
Dere07g1652 278 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Dere07g1652 278 PRINTS Tubby superfamily signature 146 162 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1652 Dere-ChrDere07 24507261 24508397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1652 217 268 TUB Transcription Factor Family AT1G76900 72.727 5.12e-19 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere07g1652 Tub 5.6e-36 CL0395