LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g1614	ATGTCTCTCACTGAAGCAGCTTCTCCTCAGCTTAAACAACAAGCCCAAGCCGATTCCAAGCCGTTTTCCAATCGGGGCTCCAGGAATTGTACCCGTAAACCCGGATCCACATTCCGCGGTGTTCGTAAACGGGCCTGGGGCCGCTACGTGTCGGAGATACGTCTACCGGGTCAGAAGACCCGCATATGGCTAGGGTCGTTCGGGTCGCCCGAGAGGGCGGCTCGCGCGTATGACTCGGCGGCTTTCTTCTTGAAGGGGAGCTCGGCGAGGCTTAATTTCCCACACTTGGCTGAGCTGCTGCCTCGCCCACGGTCGTCTTCACGGAGAGATATACAGTCGGCGGCTGCTAAGGCAGCGCTTGAGCCGGTGAAGGAACGGTGCGATCGGGATCCGACCCGGTTCTCGGGAGAAACGGATGTTTTGGACTTCGATCTGACGGAGTGGTGGAATTTGGTCTGTTTTGGGAACGACTCGGGTGTGACGACGTCGTTTGGTGATGCGAATGAAGCTCCTCATTTGAGTCCTCTAGGGTTGGAGTCAGAGAATGGAGACTTGCCGTGGATTGAAGAGATGGACGATGAGATATCGATGGCAGTACGATTCTAG	606	0.5627	MSLTEAASPQLKQQAQADSKPFSNRGSRNCTRKPGSTFRGVRKRAWGRYVSEIRLPGQKTRIWLGSFGSPERAARAYDSAAFFLKGSSARLNFPHLAELLPRPRSSSRRDIQSAAAKAALEPVKERCDRDPTRFSGETDVLDFDLTEWWNLVCFGNDSGVTTSFGDANEAPHLSPLGLESENGDLPWIEEMDDEISMAVRF	201

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g1614	201	MobiDBLite	consensus disorder prediction	1	37	-	-
	Dere07g1614	201	Gene3D	AP2/ERF domain	37	95	IPR036955	GO:0003700\|GO:0006355
	Dere07g1614	201	Pfam	AP2 domain	38	86	IPR001471	GO:0003700\|GO:0006355
	Dere07g1614	201	FunFam	Ethylene-responsive transcription factor 2	36	95	-	-
	Dere07g1614	201	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	21	128	-	-
	Dere07g1614	201	MobiDBLite	consensus disorder prediction	1	34	-	-
	Dere07g1614	201	CDD	AP2	36	96	IPR001471	GO:0003700\|GO:0006355
	Dere07g1614	201	PRINTS	Ethylene responsive element binding protein signature	38	49	IPR001471	GO:0003700\|GO:0006355
	Dere07g1614	201	PRINTS	Ethylene responsive element binding protein signature	76	96	IPR001471	GO:0003700\|GO:0006355
	Dere07g1614	201	SUPERFAMILY	DNA-binding domain	36	95	IPR016177	GO:0003677
	Dere07g1614	201	ProSiteProfiles	AP2/ERF domain profile.	37	94	IPR001471	GO:0003700\|GO:0006355
	Dere07g1614	201	SMART	rav1_2	37	100	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g1614	Dere-ChrDere07	23284414	23285019	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g1614	23	134	AP2-EREBP Transcription Factor Family	AT4G32800	50.893	2.34e-30	109

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere07g1614		AP2	6.6e-12	CL0081