Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1603 ATGGCATACGCAGCGATGAAGCCCGCTAAGCCGGGTTTGGAGGAGCCTACGGAGCAGATTCACAAGATCAGGATTACCCTTTCCTCTAAAAACGTGAAAAATCTCGAGAAAGTTTGTGCGGACCTGGTCCGAGGTGCCAAGGACAAGAGGCTCAGGGTCAAGGGACCTGTAAGAATGCCCACTAAAGTTCTTCACATTACCACCAGGAAATCCCCATGTGGTGAAGGTACCAACACTTGGGACAGGTTTGAACTTCGTGTGCACAAGAGAGTTATTGACCTATACAGCTCCCCTGATGTGGTTAAGCAGATTACTTCAATTACAATTGAACCTGGCGTGGAAGTTGAGGTTACCATTGCAGATGCTTGA 369 0.4824 MAYAAMKPAKPGLEEPTEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1603 122 Hamap 30S ribosomal protein S10 [rpsJ]. 20 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere07g1603 122 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere07g1603 122 NCBIfam 30S ribosomal protein S10 21 119 IPR005729 GO:0003735|GO:0006412|GO:0015935
Dere07g1603 122 SUPERFAMILY Ribosomal protein S10 22 119 IPR036838 -
Dere07g1603 122 Gene3D Ribosomal protein S10 domain 7 121 IPR036838 -
Dere07g1603 122 FunFam 40S ribosomal protein S20 7 121 - -
Dere07g1603 122 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 15 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere07g1603 122 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere07g1603 122 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere07g1603 122 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere07g1603 122 Pfam Ribosomal protein S10p/S20e 24 118 IPR027486 -
Dere07g1603 122 SMART Ribosomal_S10_2 24 118 IPR027486 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere07g1603 Dere-ChrDere07 23066235 23068108 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1603 2 122 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 91.736 1.36e-79 228