LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g1595	ATGGCTGACGAAGAGAGTTCAGTTGAAGATGATACCTACCGTAGCCTTCGTGCTAGCCCTATTAAGTCATGTTCCCAAGACCGAACCAATATTAATGACTTTGAAATAATAAAACCAATAAGCCAAGGTGCATTTGGACGAGTTTTCCTTGCGCGAAAAAGAGCAACTGGTGATTTATTTGCTATAAAGGTTCTGAAAAAAGCTGACATGATCCGCAAAAATGCAGTTGAAAGTATTTTGGCAGAGCGAGATATTCTCATATCAGTTCAAAATCCCTTTGTGGTTCGATTTTTCTACTCTTTCACAGGTAGAGAAAATCTTTATTTGGTTATAGAGTATTTAAATGGTGGAGATCTTTATTCCCTATTGAGAAATCTAGGTTGCTTAGATGAAGACATGGCTCGTGTATATATTGCAGAAGTTCTTGCATTGGAGTATTTGCATTCCTTAAATGTGATTCACAGAGACATAAAACCAGATAACTTGTTAATTGGTCAAGATGGTCACCTTAAGTTGACAGATTTTGGGCTCTCTAAGGTTGGTCTTATTGATAGCACAAACGACTTATCTGCTCCATCTCTTTCCAGTAATGGTTTCCTAGGAGATTTTGAGCCAAAAGGTCAACACTTTTCAAAAAGAGAACAACGTCGAAAGCAACCAGTAGTTGGCACTCCAGATTATTTAGCACCTGAGATACTTTTAGGAATGGGGCACGGTGCAACTGCTGATTGGTGGTCTGTGGGTGTTATACTTTATGAGGTTCTTGTGGGTATTCCACCATTCAATGCAGAACATCCACAAGTTATTGAGTACAATAAATGGCATGCGTTGTAA	834	0.3873	MADEESSVEDDTYRSLRASPIKSCSQDRTNINDFEIIKPISQGAFGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERDILISVQNPFVVRFFYSFTGRENLYLVIEYLNGGDLYSLLRNLGCLDEDMARVYIAEVLALEYLHSLNVIHRDIKPDNLLIGQDGHLKLTDFGLSKVGLIDSTNDLSAPSLSSNGFLGDFEPKGQHFSKREQRRKQPVVGTPDYLAPEILLGMGHGATADWWSVGVILYEVLVGIPPFNAEHPQVIEYNKWHAL	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g1595	277	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Dere07g1595	277	FunFam	Probable serine/threonine-protein kinase cot-1	117	276	-	-
	Dere07g1595	277	ProSiteProfiles	Protein kinase domain profile.	34	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g1595	277	PIRSF	ILK	6	275	-	-
	Dere07g1595	277	Gene3D	Phosphorylase Kinase; domain 1	32	117	-	-
	Dere07g1595	277	Gene3D	Transferase(Phosphotransferase) domain 1	118	269	-	-
	Dere07g1595	277	Pfam	Protein kinase domain	34	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g1595	277	SUPERFAMILY	Protein kinase-like (PK-like)	16	271	IPR011009	-
	Dere07g1595	277	CDD	STKc_MAST_like	40	272	-	-
	Dere07g1595	277	FunFam	probable serine/threonine protein kinase IREH1	32	121	-	-
	Dere07g1595	277	PANTHER	SERINE/THREONINE-PROTEIN KINASE	26	269	-	-
	Dere07g1595	277	SMART	serkin_6	34	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g1595	Dere-ChrDere07	22979624	22983703	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g1595	1	272	AGC Kinase Gene Family	AT5G62310	79.197	3.82e-148	442

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_MAST	Dere07g1595		Pkinase	3.1e-55	CL0016