Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1589 ATGATAAGAAATGTGTTAGCTATAAACGGGGAATTTCTGAAGGCAGAGAATTACACAAAAAAAGATGGGTTTCCGAATTGGTTTTCTAGGCATGAGAGAAGGTTATTGAGGTCGTCTTCAGTGAAGGCGAATCTTGTGGTGGCTCAGGATGCTACAGGCCATTTTAAGACAGTGCAGGCAGCGATTGATGCAGCATCAAGGAGAAGAGTGAAGACGAGGTTCGTAATACGTGTGAAGAAAGGGGTTTATAATGAGAATATTGAGGTTGATAAGAATAATAACAATCTCATGATTGTTGGTGATGGGATGAGAGTTACCATAATCACCAGTAGTAGAAGCGTTCAAGACGGACTTACCACCTTTGGCACTGCAACAGCAGGCATAGATGGCCTTCACTTCATTGCACGGGACATCACCTTTAGAAACACAGCTGGACCTAAAGGAGGTCAAGCCGTGGCACTTCGATCGGCCTCTGACCTCTCGGTCTTCTACCGATGTGCCATCGAAGGTTACCAAGACACTCTAATGGCTCATGCACAACGACAATTCTACAGAGATTGTAGAATTTCTGGCACGGTGGATTTCATCTTTGGCAATGCAGCAGTTGTTTTACAAAATTGTGTAATTCTTGTAAGAAGGCCTTCCCAGGGCCAAGCTAACATGATCACGGCCCAAGGTCGAGGTGACCCATTTCAAAACACAGGAATCGCTATCATCAATTCTCAGATTCGAGCTGCGCCTGACCTTAGGCCTGTCGTACGTGCTTACCAAACCTATTTAGGTCGGCCATGGCAACAATATTCTAGGGTAGTTGTCATGAAAACCTACATTGAAAGCTTGGTCAGCCCACTAGGCTGGTCTCCATGGGGCAGTAGTAATTTTGCTCAAGATACATTATATTTTGGGGAATATATGAACTATGGGCCTGGTTCATCAACAAGAAAGAGAATACGATGGCCTGGGTTTCATGTCCTAAAAAGCCCAAATGAGGCAAAACAATTCACTGTGGCTGCACTCCTTGCCGGCCACACATGGCTACCTCACACTGGGGTACCTTTTTCTAATGGCATTTAA 1074 0.4488 MIRNVLAINGEFLKAENYTKKDGFPNWFSRHERRLLRSSSVKANLVVAQDATGHFKTVQAAIDAASRRRVKTRFVIRVKKGVYNENIEVDKNNNNLMIVGDGMRVTIITSSRSVQDGLTTFGTATAGIDGLHFIARDITFRNTAGPKGGQAVALRSASDLSVFYRCAIEGYQDTLMAHAQRQFYRDCRISGTVDFIFGNAAVVLQNCVILVRRPSQGQANMITAQGRGDPFQNTGIAIINSQIRAAPDLRPVVRAYQTYLGRPWQQYSRVVVMKTYIESLVSPLGWSPWGSSNFAQDTLYFGEYMNYGPGSSTRKRIRWPGFHVLKSPNEAKQFTVAALLAGHTWLPHTGVPFSNGI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1589 357 Gene3D - 38 357 IPR012334 -
Dere07g1589 357 SUPERFAMILY Pectin lyase-like 39 356 IPR011050 -
Dere07g1589 357 ProSitePatterns Pectinesterase signature 2. 189 198 IPR033131 -
Dere07g1589 357 FunFam Pectinesterase 38 357 - -
Dere07g1589 357 Pfam Pectinesterase 44 342 IPR000070 GO:0030599|GO:0042545
Dere07g1589 357 PANTHER PECTINESTERASE 2 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1589 Dere-ChrDere07 22836876 22838275 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1589 1 355 Carbohydrate Esterase AT5G51500 64.543 1.66e-170 484