Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1562 ATGGCAGAAATCTGTGTCGCTAAAATAAGAGAGAAACCCAGTTTCAGAAAAATCAGAAAGTGTAGAATTGATGCTTCCCTTGTAGTTCAAGCTTCATGGATGGTTTTTCTGGCACTTTGTGTAGGCATTTCTGGAGAGACAGAAACAGAGGCTCTTCTCAGATGGAAAGAAAGCCTTCCAAACCAGCAAATTCTGGAGTCATGGGTCTCTCCAGCTCAAAGCCCATGTTCATGGCGTGGAATCAGATGTGATAATTCTTCAGGAAGCGTGATTGAAATCAACTTGGCTTATACTGGTCTTGAAGGTACCCTTCTAAACTTGAACTTCTCTGCATTTCCAAACCTTCTTCGTCTTGATCTCAAAACAAACAATCTCACTGGCAGCATACCAGAAAACATTGGGGTCCTCTCTAACCTGCAATTCCTTGACCTTTCTACTAACAATCTCAATGGCACTTTACCTCTTTCTCTTGCTAATCTGACTCAGGTTCATGAGCTTGATGTTTCACGAAACAACATTACTGGGATATTAGACCCTAGTCTTTTCCCTGATGGATCTGATCAACCCAAAACTGGATTGATTGGGATCAGAAATCTTCTCTTTCAGGACACCCTGCTTGGTGGTAGAATTCCAGATGAAATAGGGAATATCAGAAATTTAACTGTGCTAGCTCTAGATGGGAATACATTCCATGGACCTATTCCTCCATCTCTTGGGAATTGCACACATTTAAGTGTTCTTAGGATGTCTGGAAACCAACTCTCAGGCATGATTCCTCCTAGTTATGGAAGATTGACTAATCTATCTGATGTGCGTTTTCACATAAACAATTTATATGGTCCTGTACCACAAGAATTTGGAAATCTATCTTCTTTAACAGTTCTTCATCTTGCTCAGAACAACTTCTCTGGTGAATTGCCAACTCAAGTGTGCAAAGGTGGTAAGCTTCTCAACTTCAGTGCTGCATACAATAGCTTCACTGGTCCAATCCCAGTAAGCTTGAGAAATTGTTCATCCTTATACAGAGTTCGAATTGAACATAACCTACTGACAGGTTATGTAGATCAGGATTTTGGAGTGTATCCTAATCTTACTTTCATTGACTTCAGCTACAATAGAGTGCAAGGCGTGCTCTCTTCAAACTGGGGTAGCTGCAAAAATTTGCAGTATCTTAACATGGCTGGAAATTCAATAGGTGGCACTATTCCTAGTGAGATATTTCAGTTGGATCAACTAGTAGAGCTATATCTGTCTTCCAATGAAATATCAGGAGAGATTCCTCCACAAATAGGGAACTCCTCTAGTCTGTCCATTCTATCTTTGAGTATCAATAAACTTTCTGGTTTGATACCAGTAGGTATTGGAAAGTTGTCAAATTTGCAATCTTTAGACTTGTCGTCAAATATGCTAAGAGGACCAGTCCCATATCAGATTGGGGATTGCTCAAAGTTGCTGAGATTGAATTTGAGCAACAATGACTTGAATGGAACAATCCCATACCAAATTGGAAATCTAGCAGCCTTACAAGACTTTTTGGACTTCAGTTACAATTCACTTTCTGGACAAATTCCAGCTGATATTGGTAAGCTGACAAGTTTGATAAGCTTGAATATATCTCACAACAATCTATCAGGTTCTATCCCAAGTTCTCTTAGTGGAATGTTGAGCTTGTCAAGCATCAACCTCTCTTACAACAATTTGGAGGGCCCTGTTCCTAATAGTGGCATATTCAATTCTTCATATGCAGTGGATTTAAGTAACAACAAAGATCTATGTGGGAATATTCAAGGATTACAATTATGCAATGTCTCAGTCGTCGAACGTGACGATAGAAGTAACAAAAAGAAAGTCATTATAGCCATTGTTGCTTCCTTAGGAGGAGCACTGCTTGTTCTTCTGATGTTAGTTTGGTTTTTTGTCTTTTTCAGTAAGAGAAAGACAATAGCTTTGAAACCAAACTCTGCAGTAGTTAGAAAAGATCTATTTTCAATATGGTATTTCAATGGTAGGATTGTTCATGGAGACATAATTGAAGCAACCAAGAACTTTGATGACACTTATTGCGTTGGGGAGGGAGCATTAGGAAAAGTTTACAGAGTAGAGATGCCTGGAGGTCAAGTATTTGCTGTAAAAAAGTTAAGATGTGAGGAAGATAGCTTAGACATTGAAAGCATAAAATCCTTTAAGAGCGAGATAGAAACCATGGCTGAAACACGTCACCGGAACATTGTGAAGTTGTATGGATTTTTTTCAGATGCCATGAACACATTTTTGATTTATGAGTATATGGAAAGAGGGAGCTTACTTAATATGCTGAGAAATGACAAAAAAGCAACGGAGTTAAATTGGCCAATGAGGGTTGGCATTGTTAAAGGAGTAGCACAAGCCTTATCATATATGCATCATGATTGTAACCCAACAATAATTCACAGAGACATATCAAGCAAGAATGTGTTATTGTCCGGAAATCTTGAAGCTCATGTCTCCGACTTCGGCACTGCGAGGTTCCTGAAGCCAGATTCACCTATCTGGACTTCTTTTGCTGGCACATATGGCTATGCTGCTCCAGAGCTTGCATATACAATGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGGGTTTTGGCTTTTGAGATTCTCATGGGAAAGCATCCTGGTGATCTGATTTCCCATATACAAACATCTGGTGCTCAAAACATCAACTTCGAAGAGATTTTAGACCCACGTCTCTCACGTCCTACGCAGCAACAAAACTTGAAGGAATTGGCTTTGATTTGTAATCTAGCTCTTTCATGCTTACAAACACATCCTCCTTCTCGACCAACCATGCGAAGCATAGCTCAGATGATTGAAATGGAGACTGCTCATGAGTCATGA 2880 0.3965 MAEICVAKIREKPSFRKIRKCRIDASLVVQASWMVFLALCVGISGETETEALLRWKESLPNQQILESWVSPAQSPCSWRGIRCDNSSGSVIEINLAYTGLEGTLLNLNFSAFPNLLRLDLKTNNLTGSIPENIGVLSNLQFLDLSTNNLNGTLPLSLANLTQVHELDVSRNNITGILDPSLFPDGSDQPKTGLIGIRNLLFQDTLLGGRIPDEIGNIRNLTVLALDGNTFHGPIPPSLGNCTHLSVLRMSGNQLSGMIPPSYGRLTNLSDVRFHINNLYGPVPQEFGNLSSLTVLHLAQNNFSGELPTQVCKGGKLLNFSAAYNSFTGPIPVSLRNCSSLYRVRIEHNLLTGYVDQDFGVYPNLTFIDFSYNRVQGVLSSNWGSCKNLQYLNMAGNSIGGTIPSEIFQLDQLVELYLSSNEISGEIPPQIGNSSSLSILSLSINKLSGLIPVGIGKLSNLQSLDLSSNMLRGPVPYQIGDCSKLLRLNLSNNDLNGTIPYQIGNLAALQDFLDFSYNSLSGQIPADIGKLTSLISLNISHNNLSGSIPSSLSGMLSLSSINLSYNNLEGPVPNSGIFNSSYAVDLSNNKDLCGNIQGLQLCNVSVVERDDRSNKKKVIIAIVASLGGALLVLLMLVWFFVFFSKRKTIALKPNSAVVRKDLFSIWYFNGRIVHGDIIEATKNFDDTYCVGEGALGKVYRVEMPGGQVFAVKKLRCEEDSLDIESIKSFKSEIETMAETRHRNIVKLYGFFSDAMNTFLIYEYMERGSLLNMLRNDKKATELNWPMRVGIVKGVAQALSYMHHDCNPTIIHRDISSKNVLLSGNLEAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLAFEILMGKHPGDLISHIQTSGAQNINFEEILDPRLSRPTQQQNLKELALICNLALSCLQTHPPSRPTMRSIAQMIEMETAHES 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1562 959 SMART LRR_typ_2 160 184 IPR003591 -
Dere07g1562 959 SMART LRR_typ_2 457 481 IPR003591 -
Dere07g1562 959 SMART LRR_typ_2 409 433 IPR003591 -
Dere07g1562 959 SMART LRR_typ_2 530 554 IPR003591 -
Dere07g1562 959 SMART LRR_typ_2 289 313 IPR003591 -
Dere07g1562 959 SMART LRR_typ_2 136 159 IPR003591 -
Dere07g1562 959 Pfam Leucine rich repeat N-terminal domain 47 84 IPR013210 -
Dere07g1562 959 Gene3D Ribonuclease Inhibitor 313 603 IPR032675 -
Dere07g1562 959 SUPERFAMILY RNI-like 257 591 - -
Dere07g1562 959 SUPERFAMILY Protein kinase-like (PK-like) 667 952 IPR011009 -
Dere07g1562 959 Gene3D Phosphorylase Kinase; domain 1 652 762 - -
Dere07g1562 959 FunFam MDIS1-interacting receptor like kinase 2 763 957 - -
Dere07g1562 959 SUPERFAMILY RNI-like 86 307 - -
Dere07g1562 959 ProSiteProfiles Protein kinase domain profile. 683 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1562 959 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 290 605 - -
Dere07g1562 959 FunFam Nuclear pore complex protein NUP107 45 183 - -
Dere07g1562 959 PANTHER LEUCINE RICH REPEAT KINASE 2 199 955 - -
Dere07g1562 959 Pfam Leucine rich repeat 435 494 IPR001611 GO:0005515
Dere07g1562 959 SMART serkin_6 683 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1562 959 Gene3D Ribonuclease Inhibitor 44 185 IPR032675 -
Dere07g1562 959 ProSitePatterns Tyrosine protein kinases specific active-site signature. 808 820 IPR008266 GO:0004672|GO:0006468
Dere07g1562 959 Pfam Leucine Rich Repeat 532 553 IPR001611 GO:0005515
Dere07g1562 959 Pfam Protein kinase domain 688 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1562 959 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 282 - -
Dere07g1562 959 FunFam Leucine-rich repeat receptor protein kinase MSP1 646 762 - -
Dere07g1562 959 Gene3D Transferase(Phosphotransferase) domain 1 763 959 - -
Dere07g1562 959 Gene3D Ribonuclease Inhibitor 188 312 IPR032675 -
Dere07g1562 959 PRINTS Leucine-rich repeat signature 139 152 - -
Dere07g1562 959 PRINTS Leucine-rich repeat signature 457 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1562 Dere-ChrDere07 22279773 22283279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1562 14 856 Receptor kinase-like Gene Family AT4G08850 40.148 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere07g1562 Pkinase 4.5e-46 CL0016