Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1558 ATGGCCCAGCGAAACATTTCTGCCTTCCTTCCAATTTCAGTTACTTGCTTGGCTTTGTGGGCACTATGCCAGGGCATTTCAGGACTCACCGAAACTGAAGCTTTGCTCAAATGGAAACAAAATCTCCCAAACCAACCAGTTTTAGATTCATGGGTCTCTGCACAGAACACCAACTCTAGTGCTGCTCAAACCCCATGTTCATGGCTTGGAATCACATGTGATTCTTCAGGAAGTGTGGTTGAACTAGACTTGAAACGCACTGGTCTTCAAGGTACCCTTCAAAACTTGAACTTCTCAGCATTTCCAAATCTTCTTCTTCTTAATCTCAAATTTAACAAACTCAGTGGCCCCATACCAGAAAGCATTGGGGTGCTTTCAAAACTCCAATTCCTCGACCTTAATCACAATCATCTCAATGGGACTATACCTCTGTCTCTTGCCAATCTTACTAAACTTTATGAACTTGATCTTTCACAAAACGATCTAACAGGAATCTTAGACCCTCGTCTATTTCCTAATGGCACTGATAAACCCAAAATTGGCCTGATTGGGATCCAAAATCTCGTCTTGCAAGACACCCTCCTTGGCGAAAACCATCTCTCAGGCATAATTCCGCCTAGTACTGGTAGATTGACCAATCTCATTGACATTCGCCTTCGCAACAACAATTTACATGGTCATGTGCCACAAGAGTTTGGAAATCTTTCATCTTTAACTGTACTGCTTCTTGCTGAGAACAACTTCACTGGTCAATTACCACCGCATGTGTGCAAAGGTGGTAAGCTTGTCAATTTCAGGGCAAGCTACAATAGTTTCACTGGTCCAATCCCAGTATGCCTAGGAAATTGCTCATCATTATTTAAAGTTCAACTTGAACATAACCAACTGACAGGTTATGCAGACCGAGATTTCGGAGTTTATCCTAATCTTACTTACCTTGACATAAGCTACAATAGAGTACAAGGTGAGCTCTCTGCAAATTGGGGTGCCTGTAAAAGCTTGCAACTTCTTAGAGTGGCTGGAAATTCCATACACGGCACTATTCCTGGTGAGATTTTTCAGTTGGGTCAATTAGTAGACCTTGATTTGTCCTACAACAAAATTGCAGGAGATATTCCTCCACAAATAGGGAATTCCTCAAGCCTGTACAATCTATATTTGAATAGCAACAATCTTTCAGGCATCATACCTTTGGGCATTGGAAAGCTTTCCAATCTGCAGGCTTTAGACCTATCAACGAACAAGCTCAATGGACCCTTATCAAGTAGGGAATTGTTACAAATTGCCCTACAATATTTTTTGGACTTGAGTTACAATTCACTCTCTGGAAAAATTCCTGCTGAATTTGGTAAGCTCCAAAATTTGGAAAGCTTAAATATGTCTCACAATAATTTGTCAGGCTCTATCCCTGATTTGCTTAGTAGAATGTTGAGCTTGTCAAGCCTCAACCTCTCATACAATAATTTGGAGGGTCTTGTACCGGATAGTGGCATATTCAATTCTTCCTATCCACTAGATTTGAGTAAAAACAATAAATTATGTGGAAGGATACGTGGCTTACAGCCTTGCATTGTCACTGTGACAGAAACACCACATGAAAGTAACAAGATGAAAGTTGTTATAGCTATTGTCACTTCTTTGGGAGGTGCACTGTTTGTCTCATTGTTGGTTGGTATTTTTGTTATTCGCCATAAGAGAAACTCAATAGTTTCAAAAGATCAATGTGCAGCCATGATACAAAATCCTTTTTCAATATGGCACTTCAATGGTAGAGTTGTGTACGAAGACATAATTGAAGCAACTAAGAACTTTAATGACATGTATTCAATAGGGGAGGGAGCTTTTGGAAAAGTCTATAAAGTAGTAATGCCAGGAGGTGACGTGTTCGCTATTAAAAAGTTAAGATATGAATCAGGCGACTTAGACATCGAGAGCATAAAAGCCTTTAAGAGTGAGATTGAAGCTTTGACAGAAATACGCCATCGGAACATTGTAAAGGTTGAGATCGTCAAAGGTGTCGCTCAAGCTTTATCTTACATGCATCATGATTGCAATCCACCAATAATTCACAGAGACATATCAAGCAACAATATATTATTATCTGCACATCTTGAAGCCCATGTCTCAGACTTTGGCACAGCAAGGTTCCTGAAGCCTGATTCATCAATTTGGACAACATTTGCTGGCACATATGGCTATGCTGCTCCAGAGCTTGCATACTCAATGGCAGTGTCTGAGAAATGTGATGTGTTCAGCTTTGGTGTTTTAGCTCTCGAGGTTCTTATGGGAAGGCATCCAAGTGATCTAATTTCCCACATACAAACAAGGGGTCTTCAAAACATCAACTTCAAAGAGATTTTAGATCCACGTCTAACATTGCCCGCCGAAAAAAAGTTGAAGGAATTAATTTCGATTGGGACTCTAGCTCTTTCACGTTTACAAACAAATCCTCCGTCTCGACCAACCATGCGAAGGATAGCCCAGATGATTCAAATGGATAGTGCTCAACATTGA 2514 0.4037 MAQRNISAFLPISVTCLALWALCQGISGLTETEALLKWKQNLPNQPVLDSWVSAQNTNSSAAQTPCSWLGITCDSSGSVVELDLKRTGLQGTLQNLNFSAFPNLLLLNLKFNKLSGPIPESIGVLSKLQFLDLNHNHLNGTIPLSLANLTKLYELDLSQNDLTGILDPRLFPNGTDKPKIGLIGIQNLVLQDTLLGENHLSGIIPPSTGRLTNLIDIRLRNNNLHGHVPQEFGNLSSLTVLLLAENNFTGQLPPHVCKGGKLVNFRASYNSFTGPIPVCLGNCSSLFKVQLEHNQLTGYADRDFGVYPNLTYLDISYNRVQGELSANWGACKSLQLLRVAGNSIHGTIPGEIFQLGQLVDLDLSYNKIAGDIPPQIGNSSSLYNLYLNSNNLSGIIPLGIGKLSNLQALDLSTNKLNGPLSSRELLQIALQYFLDLSYNSLSGKIPAEFGKLQNLESLNMSHNNLSGSIPDLLSRMLSLSSLNLSYNNLEGLVPDSGIFNSSYPLDLSKNNKLCGRIRGLQPCIVTVTETPHESNKMKVVIAIVTSLGGALFVSLLVGIFVIRHKRNSIVSKDQCAAMIQNPFSIWHFNGRVVYEDIIEATKNFNDMYSIGEGAFGKVYKVVMPGGDVFAIKKLRYESGDLDIESIKAFKSEIEALTEIRHRNIVKVEIVKGVAQALSYMHHDCNPPIIHRDISSNNILLSAHLEAHVSDFGTARFLKPDSSIWTTFAGTYGYAAPELAYSMAVSEKCDVFSFGVLALEVLMGRHPSDLISHIQTRGLQNINFKEILDPRLTLPAEKKLKELISIGTLALSRLQTNPPSRPTMRRIAQMIQMDSAQH 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1558 837 PRINTS Leucine-rich repeat signature 152 165 - -
Dere07g1558 837 PRINTS Leucine-rich repeat signature 403 416 - -
Dere07g1558 837 FunFam Leucine-rich repeat receptor-like protein kinase 430 524 - -
Dere07g1558 837 SMART LRR_typ_2 125 148 IPR003591 -
Dere07g1558 837 SMART LRR_typ_2 211 234 IPR003591 -
Dere07g1558 837 SMART LRR_typ_2 476 501 IPR003591 -
Dere07g1558 837 SMART LRR_typ_2 355 379 IPR003591 -
Dere07g1558 837 SMART LRR_typ_2 452 475 IPR003591 -
Dere07g1558 837 SMART LRR_typ_2 235 259 IPR003591 -
Dere07g1558 837 SMART LRR_typ_2 403 432 IPR003591 -
Dere07g1558 837 SMART LRR_typ_2 149 173 IPR003591 -
Dere07g1558 837 Gene3D Ribonuclease Inhibitor 431 521 IPR032675 -
Dere07g1558 837 ProSiteProfiles Protein kinase domain profile. 604 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1558 837 SUPERFAMILY Protein kinase-like (PK-like) 584 830 IPR011009 -
Dere07g1558 837 Pfam Protein kinase domain 606 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1558 837 Pfam Protein kinase domain 668 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1558 837 Pfam Leucine rich repeat 434 489 IPR001611 GO:0005515
Dere07g1558 837 PANTHER LEUCINE RICH REPEAT KINASE 2 79 167 - -
Dere07g1558 837 SUPERFAMILY L domain-like 65 256 - -
Dere07g1558 837 Gene3D Ribonuclease Inhibitor 176 430 IPR032675 -
Dere07g1558 837 FunFam Nuclear pore complex protein NUP107 29 174 - -
Dere07g1558 837 Gene3D Ribonuclease Inhibitor 27 111 IPR032675 -
Dere07g1558 837 SUPERFAMILY RNI-like 195 511 - -
Dere07g1558 837 Gene3D Transferase(Phosphotransferase) domain 1 668 837 - -
Dere07g1558 837 FunFam Leucine-rich repeat receptor protein kinase MSP1 566 672 - -
Dere07g1558 837 Gene3D Ribonuclease Inhibitor 112 175 IPR032675 -
Dere07g1558 837 ProSiteProfiles Leucine-rich repeat profile. 454 476 IPR001611 GO:0005515
Dere07g1558 837 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Dere07g1558 837 Gene3D Phosphorylase Kinase; domain 1 565 667 - -
Dere07g1558 837 ProSitePatterns Tyrosine protein kinases specific active-site signature. 688 700 IPR008266 GO:0004672|GO:0006468
Dere07g1558 837 ProSitePatterns Protein kinases ATP-binding region signature. 610 633 IPR017441 GO:0005524
Dere07g1558 837 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 182 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1558 Dere-ChrDere07 21852167 21855350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1558 81 736 Receptor kinase-like Gene Family AT4G08850 39.807 3.12e-153 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere07g1558 Pkinase 8.8e-25 CL0016