Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1546 ATGGCCCAGCATAAAATTTCTGTATTCCTTGCAATTTTAGCAACTTGCTTGGCTTTGTGGGCATTATGCCTTGGCACTTCAGGACTTACAGAAACTGAAGCTCTGCTGAACTGGAAACAAAGTCTCCCAAACCAACCAATTTTGGATTCATGGGTCTCTCCTCCACCACACTCCAATTCTAGTAGTGAAGCTCAAACCCCATGTTCATGGCGTGGAATCACATGTGATTCTTCAGGAAATGTGGTTGAACTAGACTTGAAACGCACTGGTCTTCAAGGTACCCTTCAAAACTTGAACTTCTCAGCATTTCCAAATCTGCTTCTTCTTAATCTCAAATTTAACGAACTCAATGGCCCCATACCAAAAAGCATTGGGGTGCTTTCAAAACTCCAGTTCCTTGACCTTAATCACAATCATCTCAATGGTACTATACCTCTGTCTCTTGCTAATCTCACTCAACTTTATGAGCTTGATCTTTCGCAAAATGATCTAACAGGAATACTAGACCCTCGTCTATTTCCTAATAGCACTGATCGTTCCAAAATTGGCATGATTGGGATCCAAAATCTTGTCTTACAAGACACCCTTCTTGGTGGTAGAATTCCAAATGAAATTGGGAACCTAAGAAATTTAACTATTCTAGCTTTAGATGGGAATAGCTTCTATGGGCCCGTTCCACAATCTCTAGCCAACTGTACACAGTTAAATGTTATCTCAGTGACTGAAAACCATCTCTCTGGCATAATTCCCCCTAGTATTGGTAGATTGACCAATCTCATTGATATTCGACTTCGCAACAACAATTTACATGGTCATGTGCCACAAGAGTTTGGAAATCTTTCATCTTTAACTGTGCTGCTTCTTGCTGAGAACAACTTCACTGGTCAATTACCACCGCATGTGTGCAAAGGTGGTAAGCTTGTCAATTTCACCGCAAGCCACAATAGTTTCACTGGTCCAATCCCAGTAAGCCTAAGAAATTGCTCATCTTTATTCAAAGTTCAACTTGAACATAACCAACTGACAGGTTATGCAGACCGAGATTTTGGAGTTTATCCTAATCTTACTTACCTTGACATAAGCTACAATAGAGTTCAAGGTAAGCTCTCTGCAAATTGGGGTGCCTGCAAAAGCTTGCAACTTCTTAAAGTGGCTGGAAATTTGATACGCGGCACTATTCCTGGTGAGATTTTTCAGTTGGGTCAATTAATAGGCCTTGATTTGTCCTACAACGAAATTACAGGAGAGATTCCTTTACAAATAGGGAATTCCTCGAGCATGTACAATCTATATTTGAATAGCAACAATCTTTCAGGTATGATACCTTTGGGCATTGGAAAGCTTTCCAATCTGCAGGCTTTGGACCTATCAACGAACAAGTTCAATGGACAAATCCCTTATCAAATAGGGAATTGCTACAAATTGGTGAGTTTAAATTTGAGCAACAATGACCTCTTTGGTAAAGTCCCTGACCAAATTAGAAATCTTGCTGCCCTACAATATTTTTTGGACTTGAGTTACAATTCACTCTCTGGAGAAATTCCTGGTGATCTTGATAAGCTCGCAAATTTGGAAAGCTTAAATATGTCTCACAATAATCTGTCAGGCTCTATCCCTAATTCGCTTGGTAGCATGCTGAGCTTGTCAAGCATTAACCTCTCATATAATAATTTGGAGGGTCCTGTACCAATTAGTGGCATATTCAATTCTTCTTATCCATTGGATTTAAGTAAAAACAATAATTTATGTGGAAAGATACGTGGCTTACAACCTTGCAATTTCACAATCATGGAGCCTACACATGAAAGCAACAAGAAAAAAGTTGTAATAGTTATTGTCACTTGTGTGGGAGCTGCAATGTTTATCTCAATACTGTTGATTGGGATTTTTGTTATTCGCCATGAGAGAAACTCACGAGTTTCGAAAGACAAATCTACAGCGATGATCCAAAATCCATTTTCAGTATGCCACTTCAATGGTAGAGTTGTATACGAAGACATAACTGAAGCAACTAAGAACTTTGATGACATGTATTCTATTGGGAAGGGAGCTTTTGGAACAGTTTATAAAGTGGTAATGCCAGGAGGTGACATTTTTGCTGTAAAAAAGTTAAGATATGAAGCAGAAGATTTAGATCTTGAGAGCATAAAAGCCTTTAAGAGTGAGATTGAAGCATTGACAGAAACACGCCATCGAAACATTGTGAAGTTGTATGGATTTTGCTCCCAAGGGTTGCACACATTTTTAATTTATGAGTATGTGGAAAGAGGGACTTTAGCTGATATGCTTAAAAACGAGAAAGAAGCAATAGAGTTAGATTGGCCTGTGAGGGTTGAGATCGTCAAAGGTGTAGCTCAAGCATTATCTTACATGCATCATGATTGTAATCCACCAATAATTCACAGAGACATATCAAGCAACAATATATTATTGTCAGCAAATCTTGTAGCCCATGTCTCTGACTTTGGCACAGCAAGGTTCCTGAAGCCTGATTCATCAATTTGGACAACATTTGCCGGCACATATGGCTATGCTGCTCCAGAGCTTGCATACTCAATGGCAGTGTCTGAGAAATGTGACGTGTTTAGCTTTGGAGTTTTAGCTCTTGAGGTTCTTATGGGAAAGCATCCAGGTGATATGATTTCCCATATACAAATAGCTGGTTTTCAAAACATTGACCTCAAAGAGATTTTAGATACACGTCTATCATCACCCACAGAACAAAAGTTGAAGGAATTGACTTTGATTGGGTCTCTAGCTCTATCATGTTTACAAACGAGTCCTCCATCTCGACCAACCATGCGAAGCATAGCACGGATGATTTAA 2826 0.3928 MAQHKISVFLAILATCLALWALCLGTSGLTETEALLNWKQSLPNQPILDSWVSPPPHSNSSSEAQTPCSWRGITCDSSGNVVELDLKRTGLQGTLQNLNFSAFPNLLLLNLKFNELNGPIPKSIGVLSKLQFLDLNHNHLNGTIPLSLANLTQLYELDLSQNDLTGILDPRLFPNSTDRSKIGMIGIQNLVLQDTLLGGRIPNEIGNLRNLTILALDGNSFYGPVPQSLANCTQLNVISVTENHLSGIIPPSIGRLTNLIDIRLRNNNLHGHVPQEFGNLSSLTVLLLAENNFTGQLPPHVCKGGKLVNFTASHNSFTGPIPVSLRNCSSLFKVQLEHNQLTGYADRDFGVYPNLTYLDISYNRVQGKLSANWGACKSLQLLKVAGNLIRGTIPGEIFQLGQLIGLDLSYNEITGEIPLQIGNSSSMYNLYLNSNNLSGMIPLGIGKLSNLQALDLSTNKFNGQIPYQIGNCYKLVSLNLSNNDLFGKVPDQIRNLAALQYFLDLSYNSLSGEIPGDLDKLANLESLNMSHNNLSGSIPNSLGSMLSLSSINLSYNNLEGPVPISGIFNSSYPLDLSKNNNLCGKIRGLQPCNFTIMEPTHESNKKKVVIVIVTCVGAAMFISILLIGIFVIRHERNSRVSKDKSTAMIQNPFSVCHFNGRVVYEDITEATKNFDDMYSIGKGAFGTVYKVVMPGGDIFAVKKLRYEAEDLDLESIKAFKSEIEALTETRHRNIVKLYGFCSQGLHTFLIYEYVERGTLADMLKNEKEAIELDWPVRVEIVKGVAQALSYMHHDCNPPIIHRDISSNNILLSANLVAHVSDFGTARFLKPDSSIWTTFAGTYGYAAPELAYSMAVSEKCDVFSFGVLALEVLMGKHPGDMISHIQIAGFQNIDLKEILDTRLSSPTEQKLKELTLIGSLALSCLQTSPPSRPTMRSIARMI 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1546 941 SUPERFAMILY RNI-like 83 299 - -
Dere07g1546 941 PANTHER LEUCINE RICH REPEAT KINASE 2 231 940 - -
Dere07g1546 941 FunFam Leucine-rich repeat receptor protein kinase EMS1 182 276 - -
Dere07g1546 941 SMART LRR_typ_2 448 472 IPR003591 -
Dere07g1546 941 SMART LRR_typ_2 400 424 IPR003591 -
Dere07g1546 941 SMART LRR_typ_2 256 279 IPR003591 -
Dere07g1546 941 SMART LRR_typ_2 151 175 IPR003591 -
Dere07g1546 941 SMART LRR_typ_2 208 231 IPR003591 -
Dere07g1546 941 SMART LRR_typ_2 521 545 IPR003591 -
Dere07g1546 941 SMART LRR_typ_2 280 304 IPR003591 -
Dere07g1546 941 SMART LRR_typ_2 127 150 IPR003591 -
Dere07g1546 941 SUPERFAMILY RNI-like 242 580 - -
Dere07g1546 941 ProSiteProfiles Leucine-rich repeat profile. 523 545 IPR001611 GO:0005515
Dere07g1546 941 FunFam MDIS1-interacting receptor like kinase 2 754 941 - -
Dere07g1546 941 FunFam Nuclear pore complex protein NUP107 29 181 - -
Dere07g1546 941 FunFam Leucine-rich repeat receptor protein kinase MSP1 635 753 - -
Dere07g1546 941 Pfam Protein kinase domain 677 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1546 941 ProSiteProfiles Protein kinase domain profile. 674 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1546 941 Gene3D Ribonuclease Inhibitor 117 178 IPR032675 -
Dere07g1546 941 ProSitePatterns Protein kinases ATP-binding region signature. 680 703 IPR017441 GO:0005524
Dere07g1546 941 PRINTS Leucine-rich repeat signature 521 534 - -
Dere07g1546 941 PRINTS Leucine-rich repeat signature 154 167 - -
Dere07g1546 941 ProSitePatterns Tyrosine protein kinases specific active-site signature. 799 811 IPR008266 GO:0004672|GO:0006468
Dere07g1546 941 Gene3D Ribonuclease Inhibitor 306 596 IPR032675 -
Dere07g1546 941 Gene3D Ribonuclease Inhibitor 26 116 IPR032675 -
Dere07g1546 941 Gene3D Ribonuclease Inhibitor 179 303 IPR032675 -
Dere07g1546 941 Pfam Leucine rich repeat 234 293 IPR001611 GO:0005515
Dere07g1546 941 Pfam Leucine rich repeat N-terminal domain 31 76 IPR013210 -
Dere07g1546 941 Gene3D Phosphorylase Kinase; domain 1 633 753 - -
Dere07g1546 941 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 282 595 - -
Dere07g1546 941 Gene3D Transferase(Phosphotransferase) domain 1 754 941 - -
Dere07g1546 941 SUPERFAMILY Protein kinase-like (PK-like) 656 940 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1546 Dere-ChrDere07 21033220 21036279 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1546 26 847 Receptor kinase-like Gene Family AT4G08850 40.523 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere07g1546 Pkinase 3.6e-48 CL0016