Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1542 ATGGCTGTGAGGATTATAGTGATTTCGGCAGCTTCTACACTGTTAAGCTTTGTGGGTCTACTATTTTGCACAGAGTTCTCATTTGATAAGCTTAAATTAGATGGACTAATTGGCAGGAATTTTACTCACTTGAACAACGCCAGTCATGTCAGTGAACTTCTTTGGGGATCATACACCACCATAGGGCTACTTGCAAATTTTATGATTAATGTTTTCATCCTTCTCAATCTTTGTCTCAAGACTATATTCTTCTCAGAGTTGTATCCTTCTGAAACTCGGAAACTGGTTGAGCGTCTCATAAATTATATCATTTACAAGGGGACATTTTTACCACTGATTGTACCTCCAACAATATTTGAGGCTGGTTTGTGGTCAACCTGGTTGATTGTGCTATGTTCTCTAAAGATGTTTCAAGCTCTGGTCAGAGATCGTTTGGATCGGTTGAATGCATCGCCATCTGCTACACCCTTGAAATATTTTCGTGTATATTCGGCATTGTTATTGGTTTTCTTTGTTGATGTTATCTGGATATGGCTATGTCTGGTAATATATAAAACACATAGGTTGTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTACATGGATTTCAGTTGCTTGATGTATGGCTCCATCATTCAGCATCCAACAGCTCTGGTTGCCATGGGTCCAAATTGTTTGATACATTAGGGGCAGGGTCGCTACTGGAATGGAAGGGCTTTCTTGTTCGCAATTTGGGGTTTCTCCTAGATATGGCAACTTTTTTTATGGCACTTGGTCATTACCTGCATATTTGGTGGCTTCACGGCATGGCATTCCATCTTGTAGATGCAGTCCTATTTTTAAACATACGTGCATTGCTTGGTGCCATTATAAATCGGATAAAAGGCTTTGTCAGGTTGCGAATAGCTCTAGGTGCACTTAATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTACAAGCATATGATGATGAATGTGCTATCTGTAGGGAACCAATGGCAAAGGCTAAAAGACTAAACTGTAATCATCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGTCTGACTGAGATGTATACTTGTCCGACATGTCGAAAGCCACTTTTTGTAGGCCGGCCTGAAAATGAAGCAAACTCCAACACAGGAGAAATATCAAGTGATGAGCAACTTGCACGTCAGATAAGTGCAGGACTTGATCGGCCCAACACTCCTAGACATACCATGCCTCCAGGATTATATCCCAATCAGACACCAAACTCTCTGGAAGGAACTCTTTGGAGGGGTGCAGGACTCGACTCAGGTTGGTTGCATTCTTGGCCAAGTCAAGGTGTTGACGGAGCTGGTCCATCTACTGCAATGGGAACGGTTGGACTAGGAAGAGTTCAACTGATGATGAGGCATCTTACATCTGTTGGAGAAACCTATGCTCATACTGCCCTTGAAGATGCTGCTTGGAGCCTTTGGCCTATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAGCCATCCCTCCTCCTCATAGTAGATTGCCTGGAGGCTCTGGTAGTTTACATATTAGGACACGTTCTGCAAATGATGATCTGGAAAATATACTTGCTATGGCGGAGACAGTTCGGGAGGTTCTACCTCATATACCTGATGACTTAATTTTCCAGGACTTGCAGCGGACACATTCAGTAACAGTTACGGTGAATAATCTTCTCCAAATGTGA 1755 0.4262 MAVRIIVISAASTLLSFVGLLFCTEFSFDKLKLDGLIGRNFTHLNNASHVSELLWGSYTTIGLLANFMINVFILLNLCLKTIFFSELYPSETRKLVERLINYIIYKGTFLPLIVPPTIFEAGLWSTWLIVLCSLKMFQALVRDRLDRLNASPSATPLKYFRVYSALLLVFFVDVIWIWLCLVIYKTHRLSLFLLLFFEPFSIAFETLQAILVHGFQLLDVWLHHSASNSSGCHGSKLFDTLGAGSLLEWKGFLVRNLGFLLDMATFFMALGHYLHIWWLHGMAFHLVDAVLFLNIRALLGAIINRIKGFVRLRIALGALNAALPDATTEELQAYDDECAICREPMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFVGRPENEANSNTGEISSDEQLARQISAGLDRPNTPRHTMPPGLYPNQTPNSLEGTLWRGAGLDSGWLHSWPSQGVDGAGPSTAMGTVGLGRVQLMMRHLTSVGETYAHTALEDAAWSLWPINPSQASASGSAIPPPHSRLPGGSGSLHIRTRSANDDLENILAMAETVREVLPHIPDDLIFQDLQRTHSVTVTVNNLLQM 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1542 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 387 IPR013083 -
Dere07g1542 584 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Dere07g1542 584 CDD CUE_RIN3_plant 545 582 IPR035667 -
Dere07g1542 584 SMART ring_2 338 379 IPR001841 -
Dere07g1542 584 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 4 584 - -
Dere07g1542 584 MobiDBLite consensus disorder prediction 511 532 - -
Dere07g1542 584 SUPERFAMILY RING/U-box 323 386 - -
Dere07g1542 584 ProSiteProfiles CUE domain profile. 544 584 IPR003892 GO:0043130
Dere07g1542 584 Pfam CUE domain 548 584 IPR003892 GO:0043130
Dere07g1542 584 Gene3D - 542 583 - -
Dere07g1542 584 Pfam Ring finger domain 336 380 IPR001841 -
Dere07g1542 584 CDD RING-H2_AMFR 336 383 - -
Dere07g1542 584 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1542 Dere-ChrDere07 20893370 20908697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1542 58 398 C3H Transcription Factor Family AT3G16090 26.536 2.07e-28 117