Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1532 ATGGCAGATGACAATGAAGGAGTGACATTTAAGGATCTGGGCTTATCTGAGCCATTGGTGGAAGCTTGTGAAAGGTTGGGTTGGATCAAACCATTGAAGATTCAAGCTGAAGCTATTCCTCTTGCGCTGGAAGGAAAAGATGTTATTGGGCTTGCGCAAACCGGTTCTGGTAAAACTGGTGCGTTTGCTCTTCCCATACTGCATGCCCTCTTAGAAGCACCAAGGCCGAAAGATTTTTTTGCTTGTGTTTTGTCTCCCACAAGAGAGCTTGCTATTCAAATCTCTGAGCAGTTTGAAGCTTTAGGTGCTGAAATTGGTGTCAAGTGTGCTGTGCTAGTTGGAGGAATTGACATGGTGCAGCAGTCTATCAAGATCGCAAAGCAGCCTCATATTATTGTTGGGACACCTGGACGCGTTTTGGATCACCTAAAGAACACTAAAGGTTTTACTCTTAACAGATTGAAATATTTGGTCTTGGATGAGGCTGACAGGCTGTTGAATGAGGATTTTGAGGAATCTCTCAATGAGATTCTGCAAAGTATCCCTCAACAGCGAAGAACATTTTTGTTTTCTGCTACAATGACTAAGAAGGTCCAGAAACTCCAAAGGGTTTGTTTGAGGAATCCTGTAAAGATTGAAGCAGCATCTAAATATTCTACTGTTGACACACTGAAGCAGCAGTATTGCTTTTTGCCTGCTAAGCACAAGGACTGCTACCTGGTCTATATTCTGACTGAAATGGCTGGAAGTACATCCATGGTGTTTACACGCACCTGTGATGCAACACAGCTCCTGGCTTTGACACTCAGAAATTTGGGTCTCAAGGCCATCCCAATTAACGGTCATTTGAGCCAGCCAAAGAGACTTGGTGCCTTGAATAAGTTCAAGTCTGGAGATTGCAATATCCTTATTTGCACTGATGTGGCAAGTAGAGGTCTGGACATTCCTACAGTAGATGTGGTTATCAATTATGATATCCCTACAAACTCCAAGGATTATATACATCGTGTGGGAAGGACTGCACGTGCAGGGCGGTCAGGGGTTGCCATTTCCCTTGTAAATCAATACGAGCTTGAGTGGTATGTTCAGATAGAGAAGCTTATAGGTAAGAAGTTACCAGAGTATCCTGCACAGGAAGAGGAAGTTCTACTTCTGGAAGAGCGTGTTAGCGAGGCCAAACGATTATCAGTAATGAAAATGAAGGAGAGTGGAGGGAAGAAGAAACGGAAGGGAGGAGATGATGAAGAGGAAGATATTGAGAAATATTTAGGTCTCAAGGATGGAAAATCATCCAAGAAATTCAAAAGGAAATGA 1314 0.4307 MADDNEGVTFKDLGLSEPLVEACERLGWIKPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPRPKDFFACVLSPTRELAIQISEQFEALGAEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFTLNRLKYLVLDEADRLLNEDFEESLNEILQSIPQQRRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYCFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDATQLLALTLRNLGLKAIPINGHLSQPKRLGALNKFKSGDCNILICTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLSVMKMKESGGKKKRKGGDDEEEDIEKYLGLKDGKSSKKFKRK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1532 437 SMART ultradead3 27 227 IPR014001 -
Dere07g1532 437 MobiDBLite consensus disorder prediction 400 422 - -
Dere07g1532 437 Gene3D - 2 217 IPR027417 -
Dere07g1532 437 CDD DEADc_DDX47 9 213 IPR044765 GO:0005524
Dere07g1532 437 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 8 36 IPR014014 GO:0003724
Dere07g1532 437 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 212 IPR014001 -
Dere07g1532 437 Pfam Helicase conserved C-terminal domain 239 344 IPR001650 -
Dere07g1532 437 Gene3D - 218 390 IPR027417 -
Dere07g1532 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 365 IPR027417 -
Dere07g1532 437 Pfam DEAD/DEAH box helicase 33 201 IPR011545 GO:0003676|GO:0005524
Dere07g1532 437 SMART helicmild6 263 344 IPR001650 -
Dere07g1532 437 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Dere07g1532 437 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 397 - -
Dere07g1532 437 CDD SF2_C_DEAD 224 353 - -
Dere07g1532 437 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 383 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1532 Dere-ChrDere07 20739948 20747685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1532 9 376 Eukaryotic Initiation Factors Gene Family AT3G19760 31.720 7.86e-64 209